Package Applications

Alignment command line tool wrappers.

Submodules

Bio.Align.Applications._ClustalOmega: Command line wrapper for the multiple alignment program Clustal Omega.
Bio.Align.Applications._Clustalw: Command line wrapper for the multiple alignment program Clustal W.
Bio.Align.Applications._Dialign: Command line wrapper for the multiple alignment program DIALIGN2-2.
Bio.Align.Applications._Mafft: Command line wrapper for the multiple alignment programme MAFFT.
Bio.Align.Applications._Muscle: Command line wrapper for the multiple alignment program MUSCLE.
Bio.Align.Applications._Prank: Command line wrapper for the multiple alignment program PRANK.
Bio.Align.Applications._Probcons: Command line wrapper for the multiple alignment program PROBCONS.
Bio.Align.Applications._TCoffee: Command line wrapper for the multiple alignment program TCOFFEE.

Classes

MuscleCommandline
Command line wrapper for the multiple alignment program MUSCLE.

ClustalwCommandline
Command line wrapper for clustalw (version one or two).

ClustalOmegaCommandline
Command line wrapper for clustal omega

PrankCommandline
Command line wrapper for the multiple alignment program PRANK.

MafftCommandline
Command line wrapper for the multiple alignment program MAFFT.

DialignCommandline
Command line wrapper for the multiple alignment program DIALIGN2-2.

ProbconsCommandline
Command line wrapper for the multiple alignment program PROBCONS.

TCoffeeCommandline
Commandline object for the TCoffee alignment program.