Package Bio :: Package Alphabet :: Module IUPAC
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Module IUPAC

source code

Standard nucleotide and protein alphabets defined by IUPAC.

Classes [hide private]
  ExtendedIUPACProtein
Extended uppercase IUPAC protein single letter alphabet including X etc.
  IUPACProtein
Uppercase IUPAC protein single letter alphabet of the 20 standard amino acids.
  IUPACAmbiguousDNA
Uppercase IUPAC ambiguous DNA.
  IUPACUnambiguousDNA
Uppercase IUPAC unambiguous DNA (letters GATC only).
  ExtendedIUPACDNA
Extended IUPAC DNA alphabet.
  IUPACAmbiguousRNA
Uppercase IUPAC ambiguous RNA.
  IUPACUnambiguousRNA
Uppercase IUPAC unambiguous RNA (letters GAUC only).
Variables [hide private]
  extended_protein = ExtendedIUPACProtein()
  protein = IUPACProtein()
  ambiguous_dna = IUPACAmbiguousDNA()
  unambiguous_dna = IUPACUnambiguousDNA()
  extended_dna = ExtendedIUPACDNA()
  ambiguous_rna = IUPACAmbiguousRNA()
  unambiguous_rna = IUPACUnambiguousRNA()
  __package__ = 'Bio.Alphabet'