Class BlastpgpCommandline

source code

                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
                  _BlastCommandLine --+    
                                      |    
              _BlastAllOrPgpCommandLine --+
                                          |
                                         BlastpgpCommandline

Create a commandline for the blastpgp program from NCBI (OBSOLETE).

With the release of BLAST+ (BLAST rewritten in C++ instead of C), the NCBI
are replacing blastpgp with a renamed tool psiblast. This module provides
NcbipsiblastCommandline as a wrapper for the new tool psiblast.

Like blastpgp (and blastall), this wrapper is now obsolete, and will be
deprecated and removed in a future release of Biopython.

>>> from Bio.Blast.Applications import BlastpgpCommandline
>>> cline = BlastpgpCommandline(help=True)
>>> cline
BlastpgpCommandline(cmd='blastpgp', help=True)
>>> print cline
blastpgp --help

You would typically run the command line with cline() or via the Python
subprocess module, as described in the Biopython tutorial.

Create a new instance of a command line wrapper object.