Class NcbirpsblastCommandline

source code

                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
          _NcbibaseblastCommandline --+    
                                      |    
                  _NcbiblastCommandline --+
                                          |
                                         NcbirpsblastCommandline

Wrapper for the NCBI BLAST+ program rpsblast.

With the release of BLAST+ (BLAST rewritten in C++ instead of C), the NCBI
replaced the old rpsblast tool with a similar tool of the same name. This
wrapper replaces RpsBlastCommandline, the wrapper for the old rpsblast.

>>> from Bio.Blast.Applications import NcbirpsblastCommandline
>>> cline = NcbirpsblastCommandline(help=True)
>>> cline
NcbirpsblastCommandline(cmd='rpsblast', help=True)
>>> print cline
rpsblast -help

You would typically run the command line with cline() or via the Python
subprocess module, as described in the Biopython tutorial.

Create a new instance of a command line wrapper object.

Make sure the required parameters have been set (PRIVATE).

No return value - it either works or raises a ValueError.

This is a separate method (called from __str__) so that subclasses may
override it.