Package Bio :: Package Blast :: Module Applications :: Class _Ncbiblast2SeqCommandline
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Class _Ncbiblast2SeqCommandline

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                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
          _NcbibaseblastCommandline --+    
                                      |    
                  _NcbiblastCommandline --+
                                          |
                                         _Ncbiblast2SeqCommandline
Known Subclasses:

Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE).

This is provided for subclassing, it deals with shared options
common to all the BLAST tools supporting two-sequence BLAST
(blastn, psiblast, etc) but not rpsblast or rpstblastn.

Instance Methods [hide private]
 
__init__(self, cmd=None, **kwargs)
Create a new instance of a command line wrapper object.
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_validate(self)
Make sure the required parameters have been set (PRIVATE).
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Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd=None, **kwargs)
(Constructor)

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Create a new instance of a command line wrapper object.

Overrides: object.__init__
(inherited documentation)

_validate(self)

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Make sure the required parameters have been set (PRIVATE).

No return value - it either works or raises a ValueError.

This is a separate method (called from __str__) so that subclasses may
override it.

Overrides: Application.AbstractCommandline._validate
(inherited documentation)