Package Bio :: Package Blast :: Module NCBIStandalone :: Class ShortQueryBlastError
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Class ShortQueryBlastError

source code

              object --+        
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exceptions.BaseException --+    
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        exceptions.Exception --+
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                              ShortQueryBlastError

Error caused by running a short query sequence through BLAST.

If the query sequence is too short, BLAST outputs warnings and errors:

Searching[blastall] WARNING:  [000.000]  AT1G08320: SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  AT1G08320: Blast:
[blastall] ERROR:  [000.000]  AT1G08320: Blast: Query must be at least wordsize
done

This exception is raised when that condition is detected.

Instance Methods [hide private]

Inherited from exceptions.Exception: __init__, __new__

Inherited from exceptions.BaseException: __delattr__, __getattribute__, __getitem__, __getslice__, __reduce__, __repr__, __setattr__, __setstate__, __str__, __unicode__

Inherited from object: __format__, __hash__, __reduce_ex__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from exceptions.BaseException: args, message

Inherited from object: __class__