Package Bio :: Package Blast :: Module NCBIStandalone :: Class _BlastConsumer
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Class _BlastConsumer

source code

                    object --+    
                             |    
ParserSupport.AbstractConsumer --+
                                 |
                    object --+   |
                             |   |
               _HeaderConsumer --+
                                 |
                    object --+   |
                             |   |
          _DescriptionConsumer --+
                                 |
                    object --+   |
                             |   |
            _AlignmentConsumer --+
                                 |
                    object --+   |
                             |   |
                  _HSPConsumer --+
                                 |
                    object --+   |
                             |   |
       _DatabaseReportConsumer --+
                                 |
                    object --+   |
                             |   |
           _ParametersConsumer --+
                                 |
                                _BlastConsumer
Known Subclasses:

Instance Methods [hide private]
 
__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
round(self, line) source code
 
start_header(self) source code
 
end_header(self) source code
 
end_descriptions(self) source code
 
end_alignment(self) source code
 
end_hsp(self) source code
 
end_database_report(self) source code
 
end_parameters(self) source code

Inherited from ParserSupport.AbstractConsumer: __getattr__

Inherited from _HeaderConsumer: database_info, query_info, reference, version

Inherited from _DescriptionConsumer: converged, description, description_header, model_sequences, no_hits, nonmodel_sequences, start_descriptions

Inherited from _DescriptionConsumer (private): _parse

Inherited from _AlignmentConsumer: length, multalign, start_alignment, title

Inherited from _HSPConsumer: align, frame, identities, query, sbjct, score, start_hsp, strand

Inherited from _DatabaseReportConsumer: database, gapped, ka_params, ka_params_gap, num_letters_in_database, num_sequences_in_database, posted_date, start_database_report

Inherited from _ParametersConsumer: blast_cutoff, database_length, dropoff_1st_pass, effective_database_length, effective_hsp_length, effective_query_length, effective_search_space, effective_search_space_used, frameshift, gap_penalties, gap_trigger, gap_x_dropoff, gap_x_dropoff_final, hsps_gapped, hsps_no_gap, hsps_prelim_gapped, hsps_prelim_gapped_attempted, matrix, num_extends, num_good_extends, num_hits, num_seqs_better_e, num_sequences, query_length, start_parameters, threshold, window_size

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]

Inherited from _HSPConsumer (private): _query_re, _sbjct_re

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

round(self, line)

source code 
Overrides: _DescriptionConsumer.round

start_header(self)

source code 
Overrides: _HeaderConsumer.start_header

end_header(self)

source code 
Overrides: _HeaderConsumer.end_header

end_descriptions(self)

source code 
Overrides: _DescriptionConsumer.end_descriptions

end_alignment(self)

source code 
Overrides: _AlignmentConsumer.end_alignment

end_hsp(self)

source code 
Overrides: _HSPConsumer.end_hsp

end_database_report(self)

source code 
Overrides: _DatabaseReportConsumer.end_database_report

end_parameters(self)

source code 
Overrides: _ParametersConsumer.end_parameters