Package Bio :: Package Blast :: Module NCBIStandalone :: Class _HSPConsumer

Class _HSPConsumer

object --+
         |
        _HSPConsumer

Known Subclasses:

_BlastConsumer
, _PSIBlastConsumer

Instance Methods

[hide private]

start_hsp(self)

source code

score(self, line)

source code

identities(self, line)

source code

strand(self, line)

source code

frame(self, line)

source code

query(self, line)

source code

align(self, line)

source code

sbjct(self, line)

source code

end_hsp(self)

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

_query_re = re.compile(r'Query(:?) \s*(\d+)\s*(.+) (\d+)')

_sbjct_re = re.compile(r'Sbjct(:?) \s*(\d+)\s*(.+) (\d+)')

Properties

[hide private]

Inherited from object: __class__