Package Bio :: Package Blast :: Module NCBIStandalone :: Class _ParametersConsumer
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Class _ParametersConsumer

source code

object --+
         |
        _ParametersConsumer
Known Subclasses:

Instance Methods [hide private]
 
start_parameters(self) source code
 
matrix(self, line) source code
 
gap_penalties(self, line) source code
 
num_hits(self, line) source code
 
num_sequences(self, line) source code
 
num_extends(self, line) source code
 
num_good_extends(self, line) source code
 
num_seqs_better_e(self, line) source code
 
hsps_no_gap(self, line) source code
 
hsps_prelim_gapped(self, line) source code
 
hsps_prelim_gapped_attempted(self, line) source code
 
hsps_gapped(self, line) source code
 
query_length(self, line) source code
 
database_length(self, line) source code
 
effective_hsp_length(self, line) source code
 
effective_query_length(self, line) source code
 
effective_database_length(self, line) source code
 
effective_search_space(self, line) source code
 
effective_search_space_used(self, line) source code
 
frameshift(self, line) source code
 
threshold(self, line) source code
 
window_size(self, line) source code
 
dropoff_1st_pass(self, line) source code
 
gap_x_dropoff(self, line) source code
 
gap_x_dropoff_final(self, line) source code
 
gap_trigger(self, line) source code
 
blast_cutoff(self, line) source code
 
end_parameters(self) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__