Package Bio :: Package CAPS

Package CAPS

This module deals with CAPS markers.

A CAPS marker is a location a DifferentialCutsite as described below and a
set of primers that can be used to visualize this.  More information can
be found in the paper located at:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8106085&dopt=Abstract

Copyright Jonathan Taylor 2005

Classes

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DifferentialCutsite
A differential cutsite is a location in an alignment where an enzyme cuts at least one sequence and also cannot cut at least one other sequence.

AlignmentHasDifferentLengthsError

CAPSMap
A map of an alignment showing all possible dcuts.