Package Bio :: Package CAPS :: Class CAPSMap
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Class CAPSMap

source code

object --+
         |
        CAPSMap

A map of an alignment showing all possible dcuts.

Members:
alignment  The alignment that is mapped.
dcuts      A list of possible CAPS markers in the form of
                     DifferentialCutsites.

Instance Methods [hide private]
 
__init__(self, alignment, enzymes=[])
Initialize the CAPSMap
source code
 
_digest_with(self, enzyme) source code
 
_digest(self) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, alignment, enzymes=[])
(Constructor)

source code 
Initialize the CAPSMap

Required:
alignment    The alignment to be mapped.

Optional:
enzymes      The enzymes to be used to create the map.

Overrides: object.__init__