Package Bio :: Package CodonAlign :: Module CodonAlphabet'
[hide private]
[frames] | no frames]

Module CodonAlphabet'

source code

Code for Codon Alphabet.

CodonAlphabet class is interited from Alphabet class. It is an alphabet for CodonSeq class.

Classes [hide private]
  CodonAlphabet
Generic Codon Alphabet with a size of three
Functions [hide private]
 
get_codon_alphabet(codon_table, gap_char='-') source code
Variables [hide private]
  __package__ = 'Bio.CodonAlign'
  default_alphabet = HasStopCodon(Gapped(IUPACUnambiguousDNA(), ...
  default_codon_alphabet = CodonAlphabet(Standard)
  default_codon_table = default_codon_table
  generic_by_id = {}
  generic_dna = DNAAlphabet()
Variables Details [hide private]

default_alphabet

Value:
HasStopCodon(Gapped(IUPACUnambiguousDNA(), '-'), '*')