Package Bio :: Package Data :: Module IUPACData
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Module IUPACData

source code

Functions [hide private]
 
_make_ranges(mydict) source code
 
_make_ambiguous_ranges(mydict, weight_table) source code
Variables [hide private]
  protein_letters = 'ACDEFGHIKLMNPQRSTVWY'
  extended_protein_letters = 'ACDEFGHIKLMNPQRSTVWYBXZJUO'
  protein_letters_1to3 = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E...
  protein_letters_1to3_extended = {'A': 'Ala', 'B': 'Asx', 'C': ...
  protein_letters_3to1 = {'Ala': 'A', 'Arg': 'R', 'Asn': 'N', 'A...
  protein_letters_3to1_extended = {'Ala': 'A', 'Arg': 'R', 'Asn'...
  ambiguous_dna_letters = 'GATCRYWSMKHBVDN'
  unambiguous_dna_letters = 'GATC'
  ambiguous_rna_letters = 'GAUCRYWSMKHBVDN'
  unambiguous_rna_letters = 'GAUC'
  extended_dna_letters = 'GATCBDSW'
  ambiguous_dna_values = {'A': 'A', 'B': 'CGT', 'C': 'C', 'D': '...
  ambiguous_rna_values = {'A': 'A', 'B': 'CGU', 'C': 'C', 'D': '...
  ambiguous_dna_complement = {'A': 'T', 'B': 'V', 'C': 'G', 'D':...
  ambiguous_rna_complement = {'A': 'U', 'B': 'V', 'C': 'G', 'D':...
  unambiguous_dna_weights = {'A': 347.0, 'C': 323.0, 'G': 363.0,...
  unambiguous_dna_weight_ranges = {'A': (347.0, 347.0), 'C': (32...
  unambiguous_rna_weights = {'A': 363.0, 'C': 339.0, 'G': 379.0,...
  unambiguous_rna_weight_ranges = {'A': (363.0, 363.0), 'C': (33...
  protein_weights = {'A': 89.09, 'C': 121.16, 'D': 133.1, 'E': 1...
  monoisotopic_protein_weights = {'A': 89.05, 'C': 121.02, 'D': ...
  extended_protein_values = {'A': 'A', 'B': 'ND', 'C': 'C', 'D':...
  protein_weight_ranges = {'A': (89.09, 89.09), 'C': (121.16, 12...
  atom_weights = {'Ac': 227.03, 'Ag': 107.8682, 'Al': 26.981538,...
  __package__ = None
hash(x)
  ambiguous_dna_weight_ranges = {'A': (347.0, 347.0), 'B': (322....
  ambiguous_rna_weight_ranges = {'A': (363.0, 363.0), 'B': (339....
  avg_ambiguous_dna_weights = {'A': 347.0, 'B': 336.0, 'C': 323....
  avg_ambiguous_rna_weights = {'A': 363.0, 'B': 352.666666667, '...
  avg_extended_protein_weights = {'A': 89.09, 'B': 132.61, 'C': ...
  extended_protein_weight_ranges = {'A': (89.09, 89.09), 'B': (1...
Variables Details [hide private]

protein_letters_1to3

Value:
{'A': 'Ala',
 'C': 'Cys',
 'D': 'Asp',
 'E': 'Glu',
 'F': 'Phe',
 'G': 'Gly',
 'H': 'His',
 'I': 'Ile',
...

protein_letters_1to3_extended

Value:
{'A': 'Ala',
 'B': 'Asx',
 'C': 'Cys',
 'D': 'Asp',
 'E': 'Glu',
 'F': 'Phe',
 'G': 'Gly',
 'H': 'His',
...

protein_letters_3to1

Value:
{'Ala': 'A',
 'Arg': 'R',
 'Asn': 'N',
 'Asp': 'D',
 'Cys': 'C',
 'Gln': 'Q',
 'Glu': 'E',
 'Gly': 'G',
...

protein_letters_3to1_extended

Value:
{'Ala': 'A',
 'Arg': 'R',
 'Asn': 'N',
 'Asp': 'D',
 'Asx': 'B',
 'Cys': 'C',
 'Gln': 'Q',
 'Glu': 'E',
...

ambiguous_dna_values

Value:
{'A': 'A',
 'B': 'CGT',
 'C': 'C',
 'D': 'AGT',
 'G': 'G',
 'H': 'ACT',
 'K': 'GT',
 'M': 'AC',
...

ambiguous_rna_values

Value:
{'A': 'A',
 'B': 'CGU',
 'C': 'C',
 'D': 'AGU',
 'G': 'G',
 'H': 'ACU',
 'K': 'GU',
 'M': 'AC',
...

ambiguous_dna_complement

Value:
{'A': 'T',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...

ambiguous_rna_complement

Value:
{'A': 'U',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...

unambiguous_dna_weights

Value:
{'A': 347.0, 'C': 323.0, 'G': 363.0, 'T': 322.0}

unambiguous_dna_weight_ranges

Value:
{'A': (347.0, 347.0),
 'C': (323.0, 323.0),
 'G': (363.0, 363.0),
 'T': (322.0, 322.0)}

unambiguous_rna_weights

Value:
{'A': 363.0, 'C': 339.0, 'G': 379.0, 'U': 340.0}

unambiguous_rna_weight_ranges

Value:
{'A': (363.0, 363.0),
 'C': (339.0, 339.0),
 'G': (379.0, 379.0),
 'U': (340.0, 340.0)}

protein_weights

Value:
{'A': 89.09,
 'C': 121.16,
 'D': 133.1,
 'E': 147.13,
 'F': 165.19,
 'G': 75.07,
 'H': 155.16,
 'I': 131.18,
...

monoisotopic_protein_weights

Value:
{'A': 89.05,
 'C': 121.02,
 'D': 133.04,
 'E': 147.05,
 'F': 165.08,
 'G': 75.03,
 'H': 155.07,
 'I': 131.09,
...

extended_protein_values

Value:
{'A': 'A',
 'B': 'ND',
 'C': 'C',
 'D': 'D',
 'E': 'E',
 'F': 'F',
 'G': 'G',
 'H': 'H',
...

protein_weight_ranges

Value:
{'A': (89.09, 89.09),
 'C': (121.16, 121.16),
 'D': (133.1, 133.1),
 'E': (147.13, 147.13),
 'F': (165.19, 165.19),
 'G': (75.07, 75.07),
 'H': (155.16, 155.16),
 'I': (131.18, 131.18),
...

atom_weights

Value:
{'Ac': 227.03,
 'Ag': 107.8682,
 'Al': 26.981538,
 'Am': 243.06,
 'Ar': 39.948,
 'As': 74.9216,
 'At': 209.99,
 'Au': 196.96655,
...

ambiguous_dna_weight_ranges

Value:
{'A': (347.0, 347.0),
 'B': (322.0, 363.0),
 'C': (323.0, 323.0),
 'D': (322.0, 363.0),
 'G': (363.0, 363.0),
 'H': (322.0, 347.0),
 'K': (322.0, 363.0),
 'M': (323.0, 347.0),
...

ambiguous_rna_weight_ranges

Value:
{'A': (363.0, 363.0),
 'B': (339.0, 379.0),
 'C': (339.0, 339.0),
 'D': (340.0, 379.0),
 'G': (379.0, 379.0),
 'H': (339.0, 363.0),
 'K': (340.0, 379.0),
 'M': (339.0, 363.0),
...

avg_ambiguous_dna_weights

Value:
{'A': 347.0,
 'B': 336.0,
 'C': 323.0,
 'D': 344.0,
 'G': 363.0,
 'H': 330.666666667,
 'K': 342.5,
 'M': 335.0,
...

avg_ambiguous_rna_weights

Value:
{'A': 363.0,
 'B': 352.666666667,
 'C': 339.0,
 'D': 360.666666667,
 'G': 379.0,
 'H': 347.333333333,
 'K': 359.5,
 'M': 351.0,
...

avg_extended_protein_weights

Value:
{'A': 89.09,
 'B': 132.61,
 'C': 121.16,
 'D': 133.1,
 'E': 147.13,
 'F': 165.19,
 'G': 75.07,
 'H': 155.16,
...

extended_protein_weight_ranges

Value:
{'A': (89.09, 89.09),
 'B': (132.12, 133.1),
 'C': (121.16, 121.16),
 'D': (133.1, 133.1),
 'E': (147.13, 147.13),
 'F': (165.19, 165.19),
 'G': (75.07, 75.07),
 'H': (155.16, 155.16),
...