Package Bio :: Package ExPASy
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Package ExPASy

source code

Code to access resources at ExPASy over the WWW.

See http://www.expasy.ch/

Functions:
Submodules [hide private]

Functions [hide private]
handle
get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry')
Get a handle to a PRODOC entry at ExPASy in HTML format.
source code
handle
get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry')
Get a handle to a PROSITE entry at ExPASy in HTML format.
source code
handle
get_prosite_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-raw.pl')
Get a handle to a raw PROSITE or PRODOC entry at ExPASy.
source code
 
get_sprot_raw(id)
Get a handle to a raw SwissProt entry at ExPASy.
source code
handle
sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful')
Search SwissProt by full text.
source code
handle
sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de')
Search SwissProt by name, description, gene name, species, or organelle.
source code
Variables [hide private]
  __package__ = 'Bio.ExPASy'
Function Details [hide private]

get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry')

source code 

Get a handle to a PRODOC entry at ExPASy in HTML format.

For a non-existing key XXX, ExPASy returns an HTML-formatted page containing this line: 'There is no PROSITE documentation entry XXX. Please try again.'

Returns: handle

get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry')

source code 

Get a handle to a PROSITE entry at ExPASy in HTML format.

For a non-existing key XXX, ExPASy returns an HTML-formatted page containing this line: 'There is currently no PROSITE entry for XXX. Please try again.'

Returns: handle

get_prosite_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-raw.pl')

source code 

Get a handle to a raw PROSITE or PRODOC entry at ExPASy.

For a non-existing key, ExPASy returns nothing.

Returns: handle

get_sprot_raw(id)

source code 

Get a handle to a raw SwissProt entry at ExPASy.

For an ID of XXX, fetches http://www.uniprot.org/uniprot/XXX.txt (as per the http://www.expasy.ch/expasy_urls.html documentation).