Module FSSPTools

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Classes

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FSSPAlign

FSSPMultAlign

Functions

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mult_align(sum_dict, align_dict)
Returns a biopython multiple alignment instance (Bio.Align.Generic)

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filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound)
filters a passed summary section and alignment section according to a numeric attribute in the summary section.

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name_filter(sum_dict, align_dict, name_list)
Accepts a list of names.

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Function Details

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filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound)

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filters a passed summary section and alignment section according to a numeric
attribute in the summary section. Returns new summary and alignment sections

name_filter(sum_dict, align_dict, name_list)

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Accepts a list of names. Returns a new Summary block and Alignment block which
contain the info only for those names passed.