Package Bio :: Package HMM :: Module DynamicProgramming

Module DynamicProgramming

Dynamic Programming algorithms for general usage.

This module contains classes which implement Dynamic Programming
algorithms that can be used generally.

Classes

[hide private]

AbstractDPAlgorithms
An abstract class to calculate forward and backward probabiliies.

ScaledDPAlgorithms
Implement forward and backward algorithms using a rescaling approach.

LogDPAlgorithms
Implement forward and backward algorithms using a log approach.