Package Bio :: Package KEGG :: Package Compound

Package Compound


This module provides code to work with the KEGG Ligand/Compound database.

Functions:
parse - Returns an iterator giving Record objects.

Classes:
Record - A representation of a KEGG Ligand/Compound.

Classes

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Record
Holds info from a KEGG Ligand/Compound record.

Functions

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id_wrap(indent)

source code

struct_wrap(indent)

source code

parse(handle)
Parse a KEGG Ligan/Compound file, returning Record objects.

source code

Variables

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name_wrap = [0, '', (' ', '$', 1, 1), ('-', '$', 1, 1)]

Function Details

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parse(handle)

source code

Parse a KEGG Ligan/Compound file, returning Record objects.

This is an iterator function, typically used in a for loop.  For
example, using one of the example KEGG files in the Biopython
test suite,

>>> handle = open("KEGG/compound.sample")
>>> for record in parse(handle):
...     print record.entry, record.name[0]
...
C00023 Iron
C00017 Protein
C00099 beta-Alanine
C00294 Inosine
C00298 Trypsin
C00348 Undecaprenyl phosphate
C00349 2-Methyl-3-oxopropanoate
C01386 NH2Mec