Module _AlignAce

source code

This module provides code to work with the standalone version of AlignACE, 
for motif search in DNA sequences.

AlignACE homepage:

http://atlas.med.harvard.edu/

AlignACE Citations:

Computational identification of cis-regulatory elements associated with 
groups of functionally related genes in Saccharomyces cerevisiae, 
Hughes, JD, Estep, PW, Tavazoie S, & GM Church, Journal of Molecular 
Biology 2000 Mar 10;296(5):1205-14.

Finding DNA Regulatory Motifs within Unaligned Non-Coding Sequences 
Clustered by Whole-Genome mRNA Quantitation, 
Roth, FR, Hughes, JD, Estep, PE & GM Church, Nature Biotechnology 
1998 Oct;16(10):939-45.