Package Bio :: Package PDB :: Module PDBIO'

Module PDBIO'

Output of PDB files.

Classes

PDBIO
Write a Structure object (or a subset of a Structure object) as a PDB file.

Select
Default selection (everything) during writing - can be used as base class to implement selective output.

Variables

_ATOM_FORMAT_STRING = '%s%5i %-4s%c%3s %c%4i%c %8.3f%8.3f%8....

atom_weights = {'Ac': 227.03, 'Ag': 107.8682, 'Al': 26.981538,...

Variables Details

Value:

'''%s%5i %-4s%c%3s %c%4i%c   %8.3f%8.3f%8.3f%6.2f%6.2f      %4s%2s%2s
'''

Value:

{'Ac': 227.03,
 'Ag': 107.8682,
 'Al': 26.981538,
 'Am': 243.06,
 'Ar': 39.948,
 'As': 74.9216,
 'At': 209.99,
 'Au': 196.96655,
...