Package Bio :: Package PDB :: Module Superimposer' :: Class Superimposer

Class Superimposer

object --+
         |
        Superimposer


Rotate/translate one set of atoms on top of another,
thereby minimizing the RMSD.

Instance Methods

[hide private]

__init__(self)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

apply(self, atom_list)
Rotate/translate a list of atoms.

source code

set_atoms(self, fixed, moving)
Put (translate/rotate) the atoms in fixed on the atoms in moving, in such a way that the RMSD is minimized.

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

set_atoms(self, fixed, moving)

source code


Put (translate/rotate) the atoms in fixed on the atoms in 
moving, in such a way that the RMSD is minimized.

@param fixed: list of (fixed) atoms
@param moving: list of (moving) atoms 
@type fixed,moving: [L{Atom}, L{Atom},...]

Class Superimposer

__init__(self) (Constructor)

set_atoms(self, fixed, moving)

init(self)
(Constructor)