Package Bio :: Package PDB :: Module Superimposer' :: Class Superimposer
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Class Superimposer

source code

object --+
         |
        Superimposer


Rotate/translate one set of atoms on top of another,
thereby minimizing the RMSD.

Instance Methods [hide private]
 
__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
apply(self, atom_list)
Rotate/translate a list of atoms.
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set_atoms(self, fixed, moving)
Put (translate/rotate) the atoms in fixed on the atoms in moving, in such a way that the RMSD is minimized.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

set_atoms(self, fixed, moving)

source code 

Put (translate/rotate) the atoms in fixed on the atoms in
moving, in such a way that the RMSD is minimized.

@param fixed: list of (fixed) atoms
@param moving: list of (moving) atoms
@type fixed,moving: [L{Atom}, L{Atom},...]