Package Bio :: Package Phylo :: Module CDAOIO :: Class Writer
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Class Writer

source code

object --+
         |
        Writer

Based on the writer in Bio.Nexus.Trees (str, to_string).
Instance Methods [hide private]
 
__init__(self, trees)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
write(self, handle, tree_uri='', record_complete_ancestry=False, rooted=False, **kwargs)
Write this instance's trees to a file handle.
source code
 
add_stmt_to_handle(self, handle, stmt) source code
 
process_clade(self, clade, parent=None, root=False)
recursively generate triples describing a tree of clades
source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  prefixes = {'cdao': 'http://purl.obolibrary.org/obo/cdao.owl#'...
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, trees)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

Class Variable Details [hide private]

prefixes

Value:
{'cdao': 'http://purl.obolibrary.org/obo/cdao.owl#',
 'obo': 'http://purl.obolibrary.org/obo/',
 'owl': 'http://www.w3.org/2002/07/owl#',
 'rdf': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
 'rdfs': 'http://www.w3.org/2000/01/rdf-schema#'}