Package Bio :: Package Phylo :: Module TreeConstruction
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Module TreeConstruction

source code

Classes and methods for tree construction
Classes [hide private]
  _Matrix
Base class for distance matrix or scoring matrix
  _DistanceMatrix
Distance matrix class that can be used for distance based tree algorithms.
  DistanceCalculator
Class to calculate the distance matrix from a DNA or Protein
  TreeConstructor
Base class for all tree constructor.
  DistanceTreeConstructor
Distance based tree constructor.
  Scorer
Base class for all tree scoring methods
  TreeSearcher
Base class for all tree searching methods
  NNITreeSearcher
Tree searching with Nearest Neighbor Interchanges (NNI) algorithm.
  ParsimonyScorer
Parsimony scorer with a scoring matrix.
  ParsimonyTreeConstructor
Parsimony tree constructor.
Functions [hide private]
 
_is_numeric(x) source code
Variables [hide private]
  __package__ = 'Bio.Phylo'