Package Bio :: Package Restriction
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Package Restriction

source code


Usage:
=====

    >>> from Rana.fts import fts    #
    >>> from Rana.Vector import *   # Just a way to get a sequence.
    >>> from Bio.Seq import Seq     # Use your prefer method here.
    >>> pbr = fts(pBR322)           #
    >>> seq = Seq(str(pbr))         #
    >>>
    >>> from Bio.Restriction import *
    >>> a = Analysis(AllEnzymes, seq, linear=False)
    >>> b = a.blunt()
    >>> a.print_that()              # no argument -> print all the results
    AasI       :  2169, 2582.
    AatII      :  4289.
    Acc16I     :  263, 1359, 1457, 3589.
    ...
        More enzymes here.
    ...
    >>> b = a.without_site()
    >>> a.print_that(b, '', '
 Enzymes which do not cut pBR322.

')

     Enzymes which do not cut pBR322.

    AarI      AatI      Acc65I    AcsI      AcvI      AdeI      AflII     AgeI
    AhlI      AleI      AloI      ApaI      ApoI      AscI      AsiAI     AsiSI
    Asp718I   AspA2I    AsuII     AvaIII    AvrII     AxyI      BaeI      BbrPI
    BbvCI     BclI      BcuI      BfrBI     BfrI      BglII     BlnI      BlpI
    BmgBI     BmgI      BplI      Bpu1102I  Bpu14I    BsaXI     Bse21I    BsePI
    BseRI     BshTI     BsiWI     Bsp119I   Bsp120I   Bsp1407I  Bsp1720I  Bsp19I
    BspT104I  BspTI     BsrGI     BssHI     BssHII    Bst98I    BstAUI    BstBI
    BstEII    BstPI     BstSNI    BstXI     Bsu36I    BtrI      CciNI     CelII
    Cfr42I    Cfr9I     CpoI      Csp45I    CspAI     CspCI     CspI      DraIII
    DrdII     Ecl136II  Eco105I   Eco147I   Eco72I    Eco81I    Eco91I    EcoICRI
    EcoO65I   EcoRI     EcoT22I   EspI      FalI      FbaI      FseI      FunII
    HpaI      KpnI      Ksp22I    KspAI     KspI      MabI      MfeI      MluI
    Mph1103I  MspCI     MssI      MunI      NcoI      NotI      NsiI      NspV
    OliI      PacI      PaeR7I    PasI      PauI      PceI      Pfl23II   PinAI
    PmaCI     PmeI      PmlI      Ppu10I    PsiI      Psp124BI  PspAI     PspCI
    PspEI     PspLI     PspOMI    PspXI     PsrI      RleAI     Rsr2I     RsrII
    SacI      SacII     SanDI     SauI      SbfI      SciI      SdaI      SexAI
    SfiI      Sfr274I   Sfr303I   SfuI      SgfI      SgrBI     SlaI      SmaI
    SmiI      SnaBI     SpeI      SplI      SrfI      Sse232I   Sse8387I  Sse8647I
    SseBI     SspBI     SstI      StuI      SunI      SwaI      TliI      UthSI
    Vha464I   XapI      XbaI      XcmI      XhoI      XmaCI     XmaI      XmaJI
    Zsp2I

    >>>
    

Submodules [hide private]

Variables [hide private]
  __package__ = 'Bio.Restriction'