Package Bio :: Package Restriction :: Module Restriction :: Class HpaI
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Type HpaI

source code

 object --+                
          |                
       type --+            
              |            
RestrictionType --+        
                  |        
        AbstractCut --+    
                      |    
            Palindromic --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                 OneCut --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                  Blunt --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                Defined --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
               Meth_Dep --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
 Commercially_available --+
                          |
     object --+           |
              |           |
           type --+       |
                  |       |
    RestrictionType --+   |
                      |   |
            AbstractCut --+
                          |
         object --+       |
                  |       |
               type --+   |
                      |   |
        RestrictionType --+
                          |
                         HpaI

Instance Methods [hide private]

Inherited from RestrictionType: __add__, __div__, __eq__, __floordiv__, __ge__, __gt__, __hash__, __init__, __le__, __len__, __lt__, __mod__, __ne__, __rdiv__, __repr__, __rfloordiv__, __rshift__, __rtruediv__, __str__, __truediv__

Inherited from type: __call__, __delattr__, __getattribute__, __instancecheck__, __new__, __setattr__, __subclasscheck__, __subclasses__, mro

Inherited from object: __format__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Methods [hide private]

Inherited from Palindromic: is_palindromic

Inherited from Palindromic (private): _search

Inherited from OneCut: characteristic, cut_once, cut_twice

Inherited from OneCut (private): _modify, _rev_modify

Inherited from Blunt: catalyse, catalyze, compatible_end, is_3overhang, is_5overhang, is_blunt, overhang

Inherited from Defined: elucidate, is_ambiguous, is_defined, is_unknown

Inherited from Defined (private): _drop, _mod2

Inherited from Meth_Dep: is_methylable

Inherited from Commercially_available: buffers, is_comm, supplier_list, suppliers

Inherited from AbstractCut: all_suppliers, equischizomers, frequency, is_equischizomer, is_isoschizomer, is_neoschizomer, isoschizomers, neoschizomers, search

Static Methods [hide private]

Inherited from Blunt (private): _mod1

Class Variables [hide private]
  charac = (3, -3, None, None, 'GTTAAC')
  compsite = re.compile(r'(?P<HpaI>GTTAAC)')
  dna = None
hash(x)
  freq = 4096
  fst3 = -3
  fst5 = 3
  inact_temp = 65
  opt_temp = 37
  ovhg = 0
  ovhgseq = ''
  results = None
hash(x)
  scd3 = None
hash(x)
  scd5 = None
hash(x)
  site = 'GTTAAC'
  size = 6
  substrat = 'DNA'
  suppl = ('B', 'C', 'I', 'J', 'K', 'M', 'N', 'Q', 'R', 'S', 'U'...
Properties [hide private]

Inherited from type: __abstractmethods__, __base__, __bases__, __basicsize__, __dictoffset__, __flags__, __itemsize__, __mro__, __name__, __weakrefoffset__

Inherited from object: __class__

Class Variable Details [hide private]

suppl

Value:
('B', 'C', 'I', 'J', 'K', 'M', 'N', 'Q', 'R', 'S', 'U', 'V', 'X')