Package Bio :: Package Restriction :: Package _Update :: Module RestrictionCompiler :: Class DictionaryBuilder

Class DictionaryBuilder

object --+
         |
        DictionaryBuilder

Instance Methods

[hide private]

__init__()
DictionaryBuilder([e_mail[, ftp_proxy]) -> DictionaryBuilder instance.

source code

None

build_dict(DB)
Construct the dictionary and build the files containing the new dictionaries.

source code

None

install_dict(DB)
Install the newly created dictionary in the site-packages folder.

source code

None

no_install(BD)
build the new dictionary but do not install the dictionary.

source code

None

lastrebasefile(BD)
Check the emboss files are up to date and download them if they are not.

source code

parseline(self, line)

source code

removestart(self, file)

source code

getblock(self, file, index)

source code

get(self, block)

source code

information_mixer(self, file1, file2, file3)

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init()
(Constructor)

source code

DictionaryBuilder([e_mail[, ftp_proxy]) -> DictionaryBuilder instance.

If the emboss files used for the construction need to be updated this
class will download them if the ftp connection is correctly set.
either in RanaConfig.py or given at run time.

e_mail is the e-mail address used as password for the anonymous
ftp connection.

proxy is the ftp_proxy to use if any.

Overrides: object.__init__

install_dict(DB)

source code

Install the newly created dictionary in the site-packages folder.

May need super user privilege on some architectures.

Returns: None

Class DictionaryBuilder

__init__() (Constructor)

install_dict(DB)

init()
(Constructor)