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__init__(self,
handle,
comments=False,
fields=['qseqid', 'sseqid', 'pident', 'length', 'mismatch', 'gapopen'...)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature |
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_prep_fields(self,
fields)
Validates and formats the given fields for use by the parser. |
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_parse_commented_qresult(self)
Iterator returning `QueryResult` objects from a commented file. |
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_parse_comments(self)
Returns a dictionary containing tab file comments. |
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_parse_fields_line(self)
Returns a list of column short names from the 'Fields'
comment line. |
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_parse_result_row(self)
Returns a dictionary of parsed row values. |
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_get_id(self,
parsed)
Returns the value used for a QueryResult or Hit ID from a parsed row. |
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_parse_qresult(self)
Generator function that returns QueryResult objects. |
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_get_frag_frame(self,
frag,
seq_type,
parsedict)
Returns `HSPFragment` frame given the object, its sequence type,
and its parsed dictionary values. |
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_get_frag_strand(self,
frag,
seq_type,
parsedict)
Returns `HSPFragment` strand given the object, its sequence type,
and its parsed dictionary values. |
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Inherited from object:
__delattr__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__str__
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