Package Bio :: Package SearchIO :: Module BlatIO :: Class BlatPslIndexer
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Class BlatPslIndexer

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               object --+        
                        |        
File._IndexedSeqFileProxy --+    
                            |    
         _index.SearchIndexer --+
                                |
                               BlatPslIndexer

Indexer class for BLAT PSL output.
Nested Classes [hide private]
  _parser
Parser for the BLAT PSL format.
Instance Methods [hide private]
 
__init__(self, filename, pslx=False)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
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__iter__(self)
Iterates over the file handle; yields key, start offset, and length.
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get_raw(self, offset)
Returns the raw string of a QueryResult object from the given offset.
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Inherited from _index.SearchIndexer: get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, filename, pslx=False)
(Constructor)

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x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__
(inherited documentation)

__iter__(self)

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Iterates over the file handle; yields key, start offset, and length.
Overrides: File._IndexedSeqFileProxy.__iter__

get_raw(self, offset)

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Returns the raw string of a QueryResult object from the given offset.
Overrides: File._IndexedSeqFileProxy.get_raw