Package Bio :: Package SearchIO :: Package ExonerateIO :: Module _base :: Class _BaseExonerateIndexer
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Class _BaseExonerateIndexer

source code

               object --+        
                        |        
File._IndexedSeqFileProxy --+    
                            |    
         _index.SearchIndexer --+
                                |
                               _BaseExonerateIndexer
Known Subclasses:

Indexer class for Exonerate plain text.

Instance Methods [hide private]
 
get_qresult_id(self, pos) source code
 
__iter__(self)
Iterates over the file handle; yields key, start offset, and length.
source code

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from File._IndexedSeqFileProxy: get_raw

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _parser = None
hash(x)
  _query_mark = None
hash(x)
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__iter__(self)

source code 
Iterates over the file handle; yields key, start offset, and length.

Overrides: File._IndexedSeqFileProxy.__iter__