Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_cigar

Module exonerate_cigar

Bio.SearchIO parser for Exonerate cigar output format.

Classes

ExonerateCigarParser
Parser for Exonerate cigar strings.

ExonerateCigarIndexer
Indexer class for exonerate cigar lines.

Variables

_RE_CIGAR = re.compile(r'(?x)^cigar:\s+(\S+)\s+(\d+)\s+(\d+)\s...

Variables Details

Value:

re.compile(r'(?x)^cigar:\s+(\S+)\s+(\d+)\s+(\d+)\s+([\+-\.])\s+(\S+)\s
+(\d+)\s+(\d+)\s+([\+-\.])\s+(\d+)(\s+.*)$')