Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_cigar
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Module exonerate_cigar

source code

Bio.SearchIO parser for Exonerate cigar output format.

Classes [hide private]
  ExonerateCigarParser
Parser for Exonerate cigar strings.
  ExonerateCigarIndexer
Indexer class for exonerate cigar lines.
Variables [hide private]
  _RE_CIGAR = re.compile(r'(?x)^cigar:\s+(\S+)\s+(\d+)\s+(\d+)\s...
  __package__ = 'Bio.SearchIO.ExonerateIO'
Variables Details [hide private]

_RE_CIGAR

Value:
re.compile(r'(?x)^cigar:\s+(\S+)\s+(\d+)\s+(\d+)\s+([\+-\.])\s+(\S+)\s\
+(\d+)\s+(\d+)\s+([\+-\.])\s+(\d+)(\s+.*)$')