Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_cigar :: Class ExonerateCigarIndexer
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Class ExonerateCigarIndexer

source code

                 object --+                
                          |                
  File._IndexedSeqFileProxy --+            
                              |            
           _index.SearchIndexer --+        
                                  |        
        _base._BaseExonerateIndexer --+    
                                      |    
exonerate_vulgar.ExonerateVulgarIndexer --+
                                          |
                                         ExonerateCigarIndexer

Indexer class for exonerate cigar lines.

Nested Classes [hide private]
  _parser
Parser for Exonerate cigar strings.
Instance Methods [hide private]
 
get_qresult_id(self, pos)
Returns the query ID of the nearest cigar line.
source code

Inherited from exonerate_vulgar.ExonerateVulgarIndexer: get_raw

Inherited from _base._BaseExonerateIndexer: __iter__

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _query_mark = 'cigar'
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

get_qresult_id(self, pos)

source code 
Returns the query ID of the nearest cigar line.

Overrides: _base._BaseExonerateIndexer.get_qresult_id