Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_cigar :: Class ExonerateCigarParser
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Class ExonerateCigarParser

source code

                object --+    
                         |    
_base._BaseExonerateParser --+
                             |
                            ExonerateCigarParser

Parser for Exonerate cigar strings.

Instance Methods [hide private]
 
parse_alignment_block(self, header) source code

Inherited from _base._BaseExonerateParser: __init__, __iter__, read_until

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _ALN_MARK = 'cigar'
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

parse_alignment_block(self, header)

source code 
Overrides: _base._BaseExonerateParser.parse_alignment_block