Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_text :: Class ExonerateTextIndexer
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Class ExonerateTextIndexer

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               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
         _index.SearchIndexer --+    
                                |    
      _base._BaseExonerateIndexer --+
                                    |
                                   ExonerateTextIndexer

Indexer class for Exonerate plain text.

Nested Classes [hide private]
  _parser
Parser for Exonerate plain text output.
Instance Methods [hide private]
 
get_qresult_id(self, pos)
Returns the query ID from the nearest "Query:" line.
source code
 
get_raw(self, offset)
Returns the raw string of a QueryResult object from the given offset.
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Inherited from _base._BaseExonerateIndexer: __iter__

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _query_mark = 'C4 Alignment'
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

get_qresult_id(self, pos)

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Returns the query ID from the nearest "Query:" line.

Overrides: _base._BaseExonerateIndexer.get_qresult_id

get_raw(self, offset)

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Returns the raw string of a QueryResult object from the given offset.

Overrides: File._IndexedSeqFileProxy.get_raw