Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer2_text
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Module hmmer2_text

source code

Bio.SearchIO parser for HMMER 2 text output.
Classes [hide private]
  _HitPlaceholder
  Hmmer2TextParser
Iterator for the HMMER 2.0 text output.
  Hmmer2TextIndexer
Indexer for hmmer2-text format.
Variables [hide private]
  _HSP_ALIGN_LINE = re.compile(r'(\S+):\s+domain (\d+) of (\d+)')
  __package__ = 'Bio.SearchIO.HmmerIO'