Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer2_text :: Class Hmmer2TextIndexer

Class Hmmer2TextIndexer

               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
         _index.SearchIndexer --+    
                                |    
      _base._BaseHmmerTextIndexer --+
                                    |
                                   Hmmer2TextIndexer

Indexer for hmmer2-text format.

Nested Classes

[hide private]

_parser
Iterator for the HMMER 2.0 text output.

Instance Methods

[hide private]

__iter__(self)
Returns (identifier, offset, length in bytes) tuples.

source code

Inherited from _base._BaseHmmerTextIndexer: __init__, get_raw

Inherited from _index.SearchIndexer: get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

qresult_start = 'Query'

qresult_end = '//'

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

iter(self)

source code

Returns (identifier, offset, length in bytes) tuples.

The length can be zero where it is not implemented or not
possible for a particular file format.

Overrides: File._IndexedSeqFileProxy.__iter__: (inherited documentation)