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__init__(self,
handle)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature |
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read_next(self,
rstrip=True)
Return the next non-empty line, trailing whitespace removed |
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push_back(self,
line)
Un-read a line that should not be parsed yet |
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parse_key_value(self)
Parse key-value pair separated by colon (:) |
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parse_preamble(self)
Parse HMMER2 preamble. |
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parse_qresult(self)
Parse a HMMER2 query block. |
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parse_hits(self)
Parse a HMMER2 hit block, beginning with the hit table. |
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parse_hsps(self,
hit_placeholders)
Parse a HMMER2 hsp block, beginning with the hsp table. |
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parse_hsp_alignments(self)
Parse a HMMER2 HSP alignment block. |
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Inherited from object:
__delattr__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__str__
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