Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_domtab :: Class Hmmer3DomtabHmmqueryParser

Class Hmmer3DomtabHmmqueryParser

                object --+        
                         |        
hmmer3_tab.Hmmer3TabParser --+    
                             |    
            Hmmer3DomtabParser --+
                                 |
                                Hmmer3DomtabHmmqueryParser

Parser for the HMMER domain table format that assumes HMM profile
coordinates are query coordinates.

Instance Methods

[hide private]

Inherited from Hmmer3DomtabParser (private): _parse_qresult, _parse_row

Inherited from hmmer3_tab.Hmmer3TabParser: __init__, __iter__

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

hmm_as_hit = False

Properties

[hide private]

Inherited from object: __class__