Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_tab :: Class Hmmer3TabIndexer
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Class Hmmer3TabIndexer

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               object --+        
                        |        
File._IndexedSeqFileProxy --+    
                            |    
         _index.SearchIndexer --+
                                |
                               Hmmer3TabIndexer
Known Subclasses:

Indexer class for HMMER table output.

Nested Classes [hide private]
  _parser
Parser for the HMMER table format.
Instance Methods [hide private]
 
__iter__(self)
Iterates over the file handle; yields key, start offset, and length.
source code
 
get_raw(self, offset)
Returns the raw string of a QueryResult object from the given offset.
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Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _query_id_idx = 2
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__iter__(self)

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Iterates over the file handle; yields key, start offset, and length.

Overrides: File._IndexedSeqFileProxy.__iter__

get_raw(self, offset)

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Returns the raw string of a QueryResult object from the given offset.

Overrides: File._IndexedSeqFileProxy.get_raw