Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_text :: Class Hmmer3TextIndexer
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Class Hmmer3TextIndexer

source code

               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
         _index.SearchIndexer --+    
                                |    
      _base._BaseHmmerTextIndexer --+
                                    |
                                   Hmmer3TextIndexer

Indexer class for HMMER plain text output.
Nested Classes [hide private]
  _parser
Parser for the HMMER 3.0 text output.
Instance Methods [hide private]
 
__iter__(self)
Returns (identifier, offset, length in bytes) tuples.
source code

Inherited from _base._BaseHmmerTextIndexer: __init__, get_raw

Inherited from _index.SearchIndexer: get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  qresult_start = 'Query: '
  qresult_end = '//'
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__iter__(self)

source code 

Returns (identifier, offset, length in bytes) tuples.

The length can be zero where it is not implemented or not possible for a particular file format.

Overrides: File._IndexedSeqFileProxy.__iter__
(inherited documentation)