Package Bio :: Package SeqIO :: Module SeqXmlIO

Module SeqXmlIO

Bio.SeqIO support for the "seqxml" file format, SeqXML.

You are expected to use this module via the Bio.SeqIO functions.

SeqXML is a lightweight XML format which is supposed be an alternative for
FASTA files. For more Information see http://www.seqXML.org and Schmitt et al
(2011), http://dx.doi.org/10.1093/bib/bbr025

Classes

[hide private]

XMLRecordIterator
Base class for building iterators for record style XML formats.

SeqXmlIterator
Breaks seqXML file into SeqRecords.

SeqXmlWriter
Writes SeqRecords into seqXML file.