Package Bio :: Package SeqUtils :: Module CodonUsageIndices
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Module CodonUsageIndices

source code

Codon adaption indxes, including Sharp and Li (1987) E. coli index.

Currently this module only defines a single codon adaption index from Sharp & Li, Nucleic Acids Res. 1987.

Variables [hide private]
  SharpEcoliIndex = {'AAA': 1, 'AAC': 1, 'AAG': 0.253, 'AAT': 0....
  __package__ = None
hash(x)
Variables Details [hide private]

SharpEcoliIndex

Value:
{'AAA': 1,
 'AAC': 1,
 'AAG': 0.253,
 'AAT': 0.051,
 'ACA': 0.076,
 'ACC': 1,
 'ACG': 0.099,
 'ACT': 0.965,
...