Package Bio :: Package Sequencing :: Package Applications :: Module _samtools
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Module _samtools

source code

Command line wrapper for samtools

Classes [hide private]
  SamtoolsViewCommandline
Command line wrapper for samtools view.
  SamtoolsMpileupCommandline
Command line wrapper for samtools mpileup.
  SamtoolsReheaderCommandline
Command line wrapper for samtools reheader.
  SamtoolsCatCommandline
Command line wrapper for samtools cat.
  SamtoolsSortCommandline
Command line wrapper for samtools sort.
  SamtoolsMergeCommandline
Command line wrapper for samtools merge.
  SamtoolsIndexCommandline
Command line wrapper for samtools index.
  SamtoolsIdxstatsCommandline
Command line wrapper for samtools idxstats.
  SamtoolsFaidxCommandline
Command line wrapper for samtools faidx.
  SamtoolsFixmateCommandline
Command line wrapper for samtools fixmate.
  SamtoolsRmdupCommandline
Command line wrapper for samtools rmdup.
  SamtoolsCalmdCommandline
Command line wrapper for samtools calmd.
  SamtoolsTargetcutCommandline
Command line wrapper for samtools targetcut.
  SamtoolsPhaseCommandline
Command line wrapper for samtools phase.
Functions [hide private]
 
_test()
Run the module's doctests (PRIVATE).
source code
Variables [hide private]
  __package__ = 'Bio.Sequencing.Applications'