Package Bio :: Package motifs :: Class Instances

Class Instances

object --+    
         |    
      list --+
             |
            Instances


A class representing instances of sequence motifs.

Instance Methods

[hide private]

new list

__init__(self, instances=[], alphabet=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature source code

__str__(self)
str(x)

source code

integer

count(self)
return number of occurrences of value

source code

search(self, sequence)
a generator function, returning found positions of motif instances in a given sequence

source code

reverse_complement(self)

source code

Inherited from list: __add__, __contains__, __delitem__, __delslice__, __eq__, __ge__, __getattribute__, __getitem__, __getslice__, __gt__, __hash__, __iadd__, __imul__, __iter__, __le__, __len__, __lt__, __mul__, __ne__, __new__, __repr__, __reversed__, __rmul__, __setitem__, __setslice__, append, extend, index, insert, pop, remove, reverse, sort

Inherited from object: __delattr__, __reduce__, __reduce_ex__, __setattr__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, instances=`[]`, alphabet=None)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Returns: new list
Overrides: object.__init__: (inherited documentation)

str(self)
(Informal representation operator)

source code

str(x)

Overrides: object.__str__: (inherited documentation)

count(self)

source code

return number of occurrences of value

Returns: integer
Overrides: list.count: (inherited documentation)

Class Instances

__init__(self, instances=[], alphabet=None) (Constructor)

__str__(self) (Informal representation operator)

count(self)

init(self, instances=`[]`, alphabet=None)
(Constructor)

str(self)
(Informal representation operator)