Package Bio :: Package motifs :: Package applications :: Module _alignace
[hide private]
[frames] | no frames]

Module _alignace

source code

This module provides code to work with the standalone version of AlignACE,
for motif search in DNA sequences.

AlignACE homepage:

http://arep.med.harvard.edu/mrnadata/mrnasoft.html

AlignACE Citations:

Computational identification of cis-regulatory elements associated with
groups of functionally related genes in Saccharomyces cerevisiae,
Hughes, JD, Estep, PW, Tavazoie S, & GM Church, Journal of Molecular
Biology 2000 Mar 10;296(5):1205-14.

Finding DNA Regulatory Motifs within Unaligned Non-Coding Sequences
Clustered by Whole-Genome mRNA Quantitation,
Roth, FR, Hughes, JD, Estep, PE & GM Church, Nature Biotechnology
1998 Oct;16(10):939-45.

Classes [hide private]
  AlignAceCommandline
Create a commandline for the AlignAce program (DEPRECATED).
  CompareAceCommandline
Create a commandline for the CompareAce program.
Functions [hide private]
 
_test()
Run the module's doctests (PRIVATE).
source code
Variables [hide private]
  __package__ = 'Bio.motifs.applications'