Package Bio :: Package motifs :: Package applications :: Module _alignace :: Class AlignAceCommandline
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Class AlignAceCommandline

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                     object --+    
                              |    
Application.AbstractCommandline --+
                                  |
                                 AlignAceCommandline

Create a commandline for the AlignAce program (DEPRECATED).

Example:

>>> from Bio.motifs.applications import AlignAceCommandline
>>> in_file = "sequences.fasta"
>>> alignace_cline = AlignAceCommandline(infile=in_file, gcback=0.55)
>>> print(alignace_cline)
AlignACE -i sequences.fasta -gcback 0.55

You would typically run the command line with alignace_cline() or via
the Python subprocess module, as described in the Biopython tutorial.

Instance Methods [hide private]
 
__init__(self, cmd='AlignACE', **kwargs)
Create a new instance of a command line wrapper object.
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Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='AlignACE', **kwargs)
(Constructor)

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Create a new instance of a command line wrapper object.

Overrides: object.__init__
(inherited documentation)