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Biopython
Package Bio :: Package motifs :: Module matrix :: Class GenericPositionMatrix
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Class GenericPositionMatrix

source code

object --+    
         |    
      dict --+
             |
            GenericPositionMatrix
Known Subclasses:
Instance Methods [hide private] 
new empty dictionary
__init__(self, alphabet, values)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature		 source code
 
__str__(self)
str(x)		 source code
 
__getitem__(self, key)
x[y]		 source code
 
reverse_complement(self) source code

Inherited from dict: __cmp__, __contains__, __delitem__, __eq__, __ge__, __getattribute__, __gt__, __hash__, __iter__, __le__, __len__, __lt__, __ne__, __new__, __repr__, __setitem__, clear, copy, fromkeys, get, has_key, items, iteritems, iterkeys, itervalues, keys, pop, popitem, setdefault, update, values

Inherited from object: __delattr__, __reduce__, __reduce_ex__, __setattr__

Properties [hide private]
  consensus
Returns the consensus sequence.
  anticonsensus
  degenerate_consensus

Inherited from object: __class__

Method Details [hide private]

__init__(self, alphabet, values)
(Constructor)

source code  
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
Returns: 
new empty dictionary
Overrides: object.__init__
(inherited documentation)

__str__(self)
(Informal representation operator)

source code  
str(x)
Overrides: object.__str__
(inherited documentation)

__getitem__(self, key)
(Indexing operator)

source code  
x[y]
Overrides: dict.__getitem__
(inherited documentation)

Property Details [hide private]

consensus

Returns the consensus sequence.
Get Method:
unreachable.consensus(self) - Returns the consensus sequence.

anticonsensus

Get Method:
unreachable.anticonsensus(self)

degenerate_consensus

Get Method:
unreachable.degenerate_consensus(self)

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