Package Bio :: Package motifs :: Module meme :: Class Motif
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Class Motif

source code

object --+    
         |    
     Motif --+
             |
            Motif

A subclass of Motif used in parsing MEME (and MAST) output.

This subclass defines functions and data specific to MEME motifs.
This includes the motif name, the evalue for a motif, and its number
of occurrences.

Instance Methods [hide private]
 
__init__(self, alphabet=None, instances=None)
x.__init__(...) initializes x; see help(type(x)) for signature
source code

Inherited from Motif: __len__, __str__, format, reverse_complement, weblogo

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from Motif: anticonsensus, background, consensus, degenerate_consensus, mask, pseudocounts, pssm, pwm

Inherited from object: __class__

Method Details [hide private]

__init__(self, alphabet=None, instances=None)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)