Package Bio :: Module pairwise2 :: Class dictionary_match
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Class dictionary_match

source code

dictionary_match(score_dict[, symmetric]) -> match_fn

Create a match function for use in an alignment. score_dict is a dictionary where the keys are tuples (residue 1, residue 2) and the values are the match scores between those residues. symmetric is a flag that indicates whether the scores are symmetric. If true, then if (res 1, res 2) doesn't exist, I will use the score at (res 2, res 1).

Instance Methods [hide private]
__init__(score_dict, symmetric=...) source code
__call__(self, charA, charB) source code