Everything


All Classes

Bio.Affy.CelFile.Record
Bio.Align.AlignInfo.PSSM
Bio.Align.AlignInfo.SummaryInfo
Bio.Align.Applications._ClustalOmega.ClustalOmegaCommandline
Bio.Align.Applications._Clustalw.ClustalwCommandline
Bio.Align.Applications._Dialign.DialignCommandline
Bio.Align.Applications._MSAProbs.MSAProbsCommandline
Bio.Align.Applications._Mafft.MafftCommandline
Bio.Align.Applications._Muscle.MuscleCommandline
Bio.Align.Applications._Prank.PrankCommandline
Bio.Align.Applications._Probcons.ProbconsCommandline
Bio.Align.Applications._TCoffee.TCoffeeCommandline
Bio.Align.Generic.Alignment
Bio.Align.MultipleSeqAlignment
Bio.AlignIO.ClustalIO.ClustalIterator
Bio.AlignIO.ClustalIO.ClustalWriter
Bio.AlignIO.EmbossIO.EmbossIterator
Bio.AlignIO.EmbossIO.EmbossWriter
Bio.AlignIO.Interfaces.AlignmentIterator
Bio.AlignIO.Interfaces.AlignmentWriter
Bio.AlignIO.Interfaces.SequentialAlignmentWriter
Bio.AlignIO.NexusIO.NexusWriter
Bio.AlignIO.PhylipIO.PhylipIterator
Bio.AlignIO.PhylipIO.PhylipWriter
Bio.AlignIO.PhylipIO.RelaxedPhylipIterator
Bio.AlignIO.PhylipIO.RelaxedPhylipWriter
Bio.AlignIO.PhylipIO.SequentialPhylipIterator
Bio.AlignIO.PhylipIO.SequentialPhylipWriter
Bio.AlignIO.StockholmIO.StockholmIterator
Bio.AlignIO.StockholmIO.StockholmWriter
Bio.Alphabet.Alphabet
Bio.Alphabet.AlphabetEncoder
Bio.Alphabet.DNAAlphabet
Bio.Alphabet.Gapped
Bio.Alphabet.HasStopCodon
Bio.Alphabet.IUPAC.ExtendedIUPACDNA
Bio.Alphabet.IUPAC.ExtendedIUPACProtein
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA
Bio.Alphabet.IUPAC.IUPACProtein
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA
Bio.Alphabet.NucleotideAlphabet
Bio.Alphabet.ProteinAlphabet
Bio.Alphabet.RNAAlphabet
Bio.Alphabet.Reduced.HPModel
Bio.Alphabet.Reduced.Murphy10
Bio.Alphabet.Reduced.Murphy15
Bio.Alphabet.Reduced.Murphy4
Bio.Alphabet.Reduced.Murphy8
Bio.Alphabet.Reduced.PC5
Bio.Alphabet.SecondaryStructure
Bio.Alphabet.SingleLetterAlphabet
Bio.Alphabet.ThreeLetterProtein
Bio.Application.AbstractCommandline
Bio.Application.ApplicationError
Bio.Application._AbstractParameter
Bio.Application._Argument
Bio.Application._ArgumentList
Bio.Application._Option
Bio.Application._StaticArgument
Bio.Application._Switch
Bio.BiopythonDeprecationWarning
Bio.BiopythonExperimentalWarning
Bio.BiopythonParserWarning
Bio.BiopythonWarning
Bio.Blast.Applications.NcbiblastformatterCommandline
Bio.Blast.Applications.NcbiblastnCommandline
Bio.Blast.Applications.NcbiblastpCommandline
Bio.Blast.Applications.NcbiblastxCommandline
Bio.Blast.Applications.NcbideltablastCommandline
Bio.Blast.Applications.NcbipsiblastCommandline
Bio.Blast.Applications.NcbirpsblastCommandline
Bio.Blast.Applications.NcbirpstblastnCommandline
Bio.Blast.Applications.NcbitblastnCommandline
Bio.Blast.Applications.NcbitblastxCommandline
Bio.Blast.Applications._NcbibaseblastCommandline
Bio.Blast.Applications._Ncbiblast2SeqCommandline
Bio.Blast.Applications._NcbiblastCommandline
Bio.Blast.Applications._NcbiblastMain2SeqCommandline
Bio.Blast.NCBIStandalone.BlastErrorParser
Bio.Blast.NCBIStandalone.BlastParser
Bio.Blast.NCBIStandalone.Iterator
Bio.Blast.NCBIStandalone.LowQualityBlastError
Bio.Blast.NCBIStandalone.PSIBlastParser
Bio.Blast.NCBIStandalone.ShortQueryBlastError
Bio.Blast.NCBIStandalone._AlignmentConsumer
Bio.Blast.NCBIStandalone._BlastConsumer
Bio.Blast.NCBIStandalone._BlastErrorConsumer
Bio.Blast.NCBIStandalone._DatabaseReportConsumer
Bio.Blast.NCBIStandalone._DescriptionConsumer
Bio.Blast.NCBIStandalone._HSPConsumer
Bio.Blast.NCBIStandalone._HeaderConsumer
Bio.Blast.NCBIStandalone._PSIBlastConsumer
Bio.Blast.NCBIStandalone._ParametersConsumer
Bio.Blast.NCBIStandalone._Scanner
Bio.Blast.NCBIXML.BlastParser
Bio.Blast.NCBIXML._XMLparser
Bio.Blast.ParseBlastTable.BlastTableEntry
Bio.Blast.ParseBlastTable.BlastTableReader
Bio.Blast.ParseBlastTable.BlastTableRec
Bio.Blast.Record.Alignment
Bio.Blast.Record.Blast
Bio.Blast.Record.DatabaseReport
Bio.Blast.Record.Description
Bio.Blast.Record.HSP
Bio.Blast.Record.Header
Bio.Blast.Record.MultipleAlignment
Bio.Blast.Record.PSIBlast
Bio.Blast.Record.Parameters
Bio.Blast.Record.Round
Bio.CAPS.AlignmentHasDifferentLengthsError
Bio.CAPS.CAPSMap
Bio.CAPS.DifferentialCutsite
Bio.Cluster.Record
Bio.CodonAlign.CodonAlignment'.CodonAlignment
Bio.CodonAlign.CodonAlphabet'.CodonAlphabet
Bio.CodonAlign.CodonSeq'.CodonSeq
Bio.Compass.Record
Bio.Crystal.Chain
Bio.Crystal.Crystal
Bio.Crystal.CrystalError
Bio.Crystal.Hetero
Bio.Data.CodonTable.AmbiguousCodonTable
Bio.Data.CodonTable.AmbiguousForwardTable
Bio.Data.CodonTable.CodonTable
Bio.Data.CodonTable.NCBICodonTable
Bio.Data.CodonTable.NCBICodonTableDNA
Bio.Data.CodonTable.NCBICodonTableRNA
Bio.Data.CodonTable.TranslationError
Bio.DocSQL.Create
Bio.DocSQL.Insert
Bio.DocSQL.IterationCursor
Bio.DocSQL.NoInsertionError
Bio.DocSQL.Query
Bio.DocSQL.QueryAll
Bio.DocSQL.QueryAllFirstItem
Bio.DocSQL.QueryGeneric
Bio.DocSQL.QueryRow
Bio.DocSQL.QuerySingle
Bio.DocSQL.Update
Bio.Emboss.Applications.DiffseqCommandline
Bio.Emboss.Applications.EInvertedCommandline
Bio.Emboss.Applications.ETandemCommandline
Bio.Emboss.Applications.Est2GenomeCommandline
Bio.Emboss.Applications.FConsenseCommandline
Bio.Emboss.Applications.FDNADistCommandline
Bio.Emboss.Applications.FDNAParsCommandline
Bio.Emboss.Applications.FNeighborCommandline
Bio.Emboss.Applications.FProtDistCommandline
Bio.Emboss.Applications.FProtParsCommandline
Bio.Emboss.Applications.FSeqBootCommandline
Bio.Emboss.Applications.FTreeDistCommandline
Bio.Emboss.Applications.FuzznucCommandline
Bio.Emboss.Applications.IepCommandline
Bio.Emboss.Applications.NeedleCommandline
Bio.Emboss.Applications.NeedleallCommandline
Bio.Emboss.Applications.PalindromeCommandline
Bio.Emboss.Applications.Primer3Commandline
Bio.Emboss.Applications.PrimerSearchCommandline
Bio.Emboss.Applications.SeqmatchallCommandline
Bio.Emboss.Applications.SeqretCommandline
Bio.Emboss.Applications.StretcherCommandline
Bio.Emboss.Applications.TranalignCommandline
Bio.Emboss.Applications.WaterCommandline
Bio.Emboss.Applications._EmbossCommandLine
Bio.Emboss.Applications._EmbossMinimalCommandLine
Bio.Emboss.Primer3.Primers
Bio.Emboss.Primer3.Record
Bio.Emboss.PrimerSearch.Amplifier
Bio.Emboss.PrimerSearch.InputRecord
Bio.Emboss.PrimerSearch.OutputRecord
Bio.Entrez.Parser.CorruptedXMLError
Bio.Entrez.Parser.DataHandler
Bio.Entrez.Parser.DictionaryElement
Bio.Entrez.Parser.IntegerElement
Bio.Entrez.Parser.ListElement
Bio.Entrez.Parser.NotXMLError
Bio.Entrez.Parser.StringElement
Bio.Entrez.Parser.StructureElement
Bio.Entrez.Parser.UnicodeElement
Bio.Entrez.Parser.ValidationError
Bio.ExPASy.Enzyme.Record
Bio.ExPASy.Prodoc.Record
Bio.ExPASy.Prodoc.Reference
Bio.ExPASy.Prosite.Record
Bio.ExPASy.ScanProsite.ContentHandler
Bio.ExPASy.ScanProsite.Parser
Bio.ExPASy.ScanProsite.Record
Bio.FSSP.FSSPAlignDict
Bio.FSSP.FSSPAlignRec
Bio.FSSP.FSSPHeader
Bio.FSSP.FSSPSumDict
Bio.FSSP.FSSPSumRec
Bio.FSSP.FSSPTools.FSSPAlign
Bio.FSSP.FSSPTools.FSSPMultAlign
Bio.FSSP.PosAlign
Bio.FSSP.fssp_rec.align
Bio.FSSP.fssp_rec.fff_rec
Bio.File.UndoHandle
Bio.File._IndexedSeqFileDict
Bio.File._IndexedSeqFileProxy
Bio.File._SQLiteManySeqFilesDict
Bio.GA.Crossover.General.SafeFitnessCrossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover
Bio.GA.Crossover.GeneralPoint.TwoCrossover
Bio.GA.Crossover.Point.SinglePointCrossover
Bio.GA.Crossover.TwoPoint.TwoPointCrossover
Bio.GA.Crossover.Uniform.UniformCrossover
Bio.GA.Evolver.GenerationEvolver
Bio.GA.Evolver.SteadyStateEvolver
Bio.GA.Mutation.General.SafeFitnessMutation
Bio.GA.Mutation.Simple.ConversionMutation
Bio.GA.Mutation.Simple.SinglePositionMutation
Bio.GA.Organism.Organism
Bio.GA.Repair.Stabilizing.AmbiguousRepair
Bio.GA.Selection.Abstract.AbstractSelection
Bio.GA.Selection.Diversity.DiversitySelection
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection
Bio.GA.Selection.Tournament.TournamentSelection
Bio.GenBank.FeatureParser
Bio.GenBank.Iterator
Bio.GenBank.LocationParserError
Bio.GenBank.ParserFailureError
Bio.GenBank.Record.Feature
Bio.GenBank.Record.Qualifier
Bio.GenBank.Record.Record
Bio.GenBank.Record.Reference
Bio.GenBank.RecordParser
Bio.GenBank.Scanner.EmblScanner
Bio.GenBank.Scanner.GenBankScanner
Bio.GenBank.Scanner.InsdcScanner
Bio.GenBank.Scanner._ImgtScanner
Bio.GenBank._BaseGenBankConsumer
Bio.GenBank._FeatureConsumer
Bio.GenBank._RecordConsumer
Bio.GenBank.utils.FeatureValueCleaner
Bio.Geo.Record.Record
Bio.Graphics.BasicChromosome.AnnotatedChromosomeSegment
Bio.Graphics.BasicChromosome.Chromosome
Bio.Graphics.BasicChromosome.ChromosomeSegment
Bio.Graphics.BasicChromosome.Organism
Bio.Graphics.BasicChromosome.SpacerSegment
Bio.Graphics.BasicChromosome.TelomereSegment
Bio.Graphics.BasicChromosome._ChromosomeComponent
Bio.Graphics.ColorSpiral.ColorSpiral
Bio.Graphics.Comparative.ComparativeScatterPlot
Bio.Graphics.DisplayRepresentation.ChromosomeCounts
Bio.Graphics.Distribution.BarChartDistribution
Bio.Graphics.Distribution.DistributionPage
Bio.Graphics.Distribution.LineDistribution
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator
Bio.Graphics.GenomeDiagram._CrossLink.CrossLink
Bio.Graphics.GenomeDiagram._Diagram.Diagram
Bio.Graphics.GenomeDiagram._Feature.Feature
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet
Bio.Graphics.GenomeDiagram._Graph.GraphData
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer
Bio.Graphics.GenomeDiagram._Track.Track
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms
Bio.HMM.DynamicProgramming.LogDPAlgorithms
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms
Bio.HMM.MarkovModel.HiddenMarkovModel
Bio.HMM.MarkovModel.MarkovModelBuilder
Bio.HMM.Trainer.AbstractTrainer
Bio.HMM.Trainer.BaumWelchTrainer
Bio.HMM.Trainer.KnownStateTrainer
Bio.HMM.Trainer.TrainingSequence
Bio.Index._InMemoryIndex
Bio.Index._ShelveIndex
Bio.KDTree.KDTree'.KDTree
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LogisticRegression.LogisticRegression
Bio.MarkovModel.MarkovModel
Bio.MaxEntropy.MaxEntropy
Bio.Medline.Record
Bio.MissingExternalDependencyError
Bio.MissingPythonDependencyError
Bio.Motif.Parsers.AlignAce.Record
Bio.Motif.Parsers.MAST.Record
Bio.Motif.Parsers.MEME.MEMEInstance
Bio.Motif.Parsers.MEME.MEMEMotif
Bio.Motif.Parsers.MEME.MEMERecord
Bio.Motif.Thresholds.ScoreDistribution
Bio.Motif._Motif.Motif
Bio.NMR.xpktools.Peaklist
Bio.NMR.xpktools.XpkEntry
Bio.NaiveBayes.NaiveBayes
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork
Bio.NeuralNetwork.Gene.Motif.MotifCoder
Bio.NeuralNetwork.Gene.Motif.MotifFinder
Bio.NeuralNetwork.Gene.Pattern.PatternIO
Bio.NeuralNetwork.Gene.Pattern.PatternRepository
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator
Bio.NeuralNetwork.Gene.Schema.Schema
Bio.NeuralNetwork.Gene.Schema.SchemaCoder
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet
Bio.NeuralNetwork.Gene.Schema.SchemaFactory
Bio.NeuralNetwork.Gene.Schema.SchemaFinder
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher
Bio.NeuralNetwork.Gene.Signature.SignatureCoder
Bio.NeuralNetwork.Gene.Signature.SignatureFinder
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop
Bio.NeuralNetwork.Training.ExampleManager
Bio.NeuralNetwork.Training.TrainingExample
Bio.Nexus.Nexus.Block
Bio.Nexus.Nexus.CharBuffer
Bio.Nexus.Nexus.Commandline
Bio.Nexus.Nexus.Nexus
Bio.Nexus.Nexus.NexusError
Bio.Nexus.Nexus.StepMatrix
Bio.Nexus.Nodes.Chain
Bio.Nexus.Nodes.ChainException
Bio.Nexus.Nodes.Node
Bio.Nexus.Nodes.NodeException
Bio.Nexus.Trees.NodeData
Bio.Nexus.Trees.Tree
Bio.Nexus.Trees.TreeError
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap
Bio.PDB.Atom.Atom
Bio.PDB.Atom.DisorderedAtom
Bio.PDB.Chain.Chain
Bio.PDB.DSSP'.DSSP
Bio.PDB.Dice.ChainSelector
Bio.PDB.Entity.DisorderedEntityWrapper
Bio.PDB.Entity.Entity
Bio.PDB.FragmentMapper'.Fragment
Bio.PDB.FragmentMapper'.FragmentMapper
Bio.PDB.HSExposure.ExposureCN
Bio.PDB.HSExposure.HSExposureCA
Bio.PDB.HSExposure.HSExposureCB
Bio.PDB.HSExposure._AbstractHSExposure
Bio.PDB.MMCIF2Dict.MMCIF2Dict
Bio.PDB.MMCIFParser'.MMCIFParser
Bio.PDB.Model.Model
Bio.PDB.NACCESS.NACCESS
Bio.PDB.NACCESS.NACCESS_atomic
Bio.PDB.NeighborSearch'.NeighborSearch
Bio.PDB.PDBExceptions.PDBConstructionException
Bio.PDB.PDBExceptions.PDBConstructionWarning
Bio.PDB.PDBExceptions.PDBException
Bio.PDB.PDBIO'.PDBIO
Bio.PDB.PDBIO'.Select
Bio.PDB.PDBList'.PDBList
Bio.PDB.PDBParser'.PDBParser
Bio.PDB.PSEA.PSEA
Bio.PDB.Polypeptide.CaPPBuilder
Bio.PDB.Polypeptide.PPBuilder
Bio.PDB.Polypeptide.Polypeptide
Bio.PDB.Polypeptide._PPBuilder
Bio.PDB.Residue.DisorderedResidue
Bio.PDB.Residue.Residue
Bio.PDB.ResidueDepth'.ResidueDepth
Bio.PDB.Structure.Structure
Bio.PDB.StructureAlignment'.StructureAlignment
Bio.PDB.StructureBuilder.StructureBuilder
Bio.PDB.Superimposer'.Superimposer
Bio.PDB.Vector'.Vector
Bio.ParserSupport.AbstractConsumer
Bio.ParserSupport.AbstractParser
Bio.ParserSupport.EventGenerator
Bio.ParserSupport.TaggingConsumer
Bio.Pathway.Interaction
Bio.Pathway.Network
Bio.Pathway.Reaction
Bio.Pathway.Rep.Graph.Graph
Bio.Pathway.Rep.MultiGraph.MultiGraph
Bio.Pathway.System
Bio.Phylo.Applications._Fasttree.FastTreeCommandline
Bio.Phylo.Applications._Phyml.PhymlCommandline
Bio.Phylo.Applications._Raxml.RaxmlCommandline
Bio.Phylo.BaseTree.BranchColor
Bio.Phylo.BaseTree.Clade
Bio.Phylo.BaseTree.Tree
Bio.Phylo.BaseTree.TreeElement
Bio.Phylo.BaseTree.TreeMixin
Bio.Phylo.CDAO.Clade
Bio.Phylo.CDAO.Tree
Bio.Phylo.CDAOIO.CDAOError
Bio.Phylo.CDAOIO.Parser
Bio.Phylo.CDAOIO.Writer
Bio.Phylo.Consensus._BitString
Bio.Phylo.NeXML.Clade
Bio.Phylo.NeXML.Tree
Bio.Phylo.NeXMLIO.NeXMLError
Bio.Phylo.NeXMLIO.Parser
Bio.Phylo.NeXMLIO.Writer
Bio.Phylo.Newick.Clade
Bio.Phylo.Newick.Tree
Bio.Phylo.NewickIO.NewickError
Bio.Phylo.NewickIO.Parser
Bio.Phylo.NewickIO.Writer
Bio.Phylo.PAML._paml.Paml
Bio.Phylo.PAML._paml.PamlError
Bio.Phylo.PAML.baseml.Baseml
Bio.Phylo.PAML.baseml.BasemlError
Bio.Phylo.PAML.codeml.Codeml
Bio.Phylo.PAML.codeml.CodemlError
Bio.Phylo.PAML.yn00.Yn00
Bio.Phylo.PAML.yn00.Yn00Error
Bio.Phylo.PhyloXML.Accession
Bio.Phylo.PhyloXML.Annotation
Bio.Phylo.PhyloXML.BinaryCharacters
Bio.Phylo.PhyloXML.BranchColor
Bio.Phylo.PhyloXML.Clade
Bio.Phylo.PhyloXML.CladeRelation
Bio.Phylo.PhyloXML.Confidence
Bio.Phylo.PhyloXML.Date
Bio.Phylo.PhyloXML.Distribution
Bio.Phylo.PhyloXML.DomainArchitecture
Bio.Phylo.PhyloXML.Events
Bio.Phylo.PhyloXML.Id
Bio.Phylo.PhyloXML.MolSeq
Bio.Phylo.PhyloXML.Other
Bio.Phylo.PhyloXML.PhyloElement
Bio.Phylo.PhyloXML.PhyloXMLWarning
Bio.Phylo.PhyloXML.Phylogeny
Bio.Phylo.PhyloXML.Phyloxml
Bio.Phylo.PhyloXML.Point
Bio.Phylo.PhyloXML.Polygon
Bio.Phylo.PhyloXML.Property
Bio.Phylo.PhyloXML.ProteinDomain
Bio.Phylo.PhyloXML.Reference
Bio.Phylo.PhyloXML.Sequence
Bio.Phylo.PhyloXML.SequenceRelation
Bio.Phylo.PhyloXML.Taxonomy
Bio.Phylo.PhyloXML.Uri
Bio.Phylo.PhyloXMLIO.Parser
Bio.Phylo.PhyloXMLIO.PhyloXMLError
Bio.Phylo.PhyloXMLIO.Writer
Bio.Phylo.TreeConstruction.DistanceCalculator
Bio.Phylo.TreeConstruction.DistanceTreeConstructor
Bio.Phylo.TreeConstruction.NNITreeSearcher
Bio.Phylo.TreeConstruction.ParsimonyScorer
Bio.Phylo.TreeConstruction.ParsimonyTreeConstructor
Bio.Phylo.TreeConstruction.Scorer
Bio.Phylo.TreeConstruction.TreeConstructor
Bio.Phylo.TreeConstruction.TreeSearcher
Bio.Phylo.TreeConstruction._DistanceMatrix
Bio.Phylo.TreeConstruction._Matrix
Bio.PopGen.Async.Async
Bio.PopGen.Async.DirectoryRetriever
Bio.PopGen.Async.FileRetriever
Bio.PopGen.Async.Local.Local
Bio.PopGen.FDist.Async.FDistAsync
Bio.PopGen.FDist.Async.SplitFDist
Bio.PopGen.FDist.Controller.FDistController
Bio.PopGen.FDist.Record
Bio.PopGen.GenePop.Controller.GenePopController
Bio.PopGen.GenePop.Controller._FileIterator
Bio.PopGen.GenePop.Controller._GenePopCommandline
Bio.PopGen.GenePop.EasyController.EasyController
Bio.PopGen.GenePop.FileParser.FileRecord
Bio.PopGen.GenePop.LargeFileParser.Record
Bio.PopGen.GenePop.Record
Bio.PopGen.SimCoal.Async.SimCoalCache
Bio.PopGen.SimCoal.Cache.SimCoalCache
Bio.PopGen.SimCoal.Controller.FastSimCoalController
Bio.PopGen.SimCoal.Controller.SimCoalController
Bio.PopGen.SimCoal.Controller._FastSimCoalCommandLine
Bio.Restriction.PrintFormat.PrintFormat
Bio.Restriction.Restriction.AanI
Bio.Restriction.Restriction.AarI
Bio.Restriction.Restriction.AasI
Bio.Restriction.Restriction.AatII
Bio.Restriction.Restriction.AbaSI
Bio.Restriction.Restriction.AbsI
Bio.Restriction.Restriction.AbstractCut
Bio.Restriction.Restriction.Acc16I
Bio.Restriction.Restriction.Acc36I
Bio.Restriction.Restriction.Acc65I
Bio.Restriction.Restriction.AccB1I
Bio.Restriction.Restriction.AccB7I
Bio.Restriction.Restriction.AccBSI
Bio.Restriction.Restriction.AccI
Bio.Restriction.Restriction.AccII
Bio.Restriction.Restriction.AccIII
Bio.Restriction.Restriction.AceIII
Bio.Restriction.Restriction.AciI
Bio.Restriction.Restriction.AclI
Bio.Restriction.Restriction.AclWI
Bio.Restriction.Restriction.AcoI
Bio.Restriction.Restriction.AcsI
Bio.Restriction.Restriction.AcuI
Bio.Restriction.Restriction.AcvI
Bio.Restriction.Restriction.AcyI
Bio.Restriction.Restriction.AdeI
Bio.Restriction.Restriction.AfaI
Bio.Restriction.Restriction.AfeI
Bio.Restriction.Restriction.AfiI
Bio.Restriction.Restriction.AflII
Bio.Restriction.Restriction.AflIII
Bio.Restriction.Restriction.AgeI
Bio.Restriction.Restriction.AgsI
Bio.Restriction.Restriction.AhaIII
Bio.Restriction.Restriction.AhdI
Bio.Restriction.Restriction.AhlI
Bio.Restriction.Restriction.AjiI
Bio.Restriction.Restriction.AjnI
Bio.Restriction.Restriction.AjuI
Bio.Restriction.Restriction.AleI
Bio.Restriction.Restriction.AlfI
Bio.Restriction.Restriction.AloI
Bio.Restriction.Restriction.AluBI
Bio.Restriction.Restriction.AluI
Bio.Restriction.Restriction.Alw21I
Bio.Restriction.Restriction.Alw26I
Bio.Restriction.Restriction.Alw44I
Bio.Restriction.Restriction.AlwFI
Bio.Restriction.Restriction.AlwI
Bio.Restriction.Restriction.AlwNI
Bio.Restriction.Restriction.Ama87I
Bio.Restriction.Restriction.Ambiguous
Bio.Restriction.Restriction.Analysis
Bio.Restriction.Restriction.Aor13HI
Bio.Restriction.Restriction.Aor51HI
Bio.Restriction.Restriction.AoxI
Bio.Restriction.Restriction.ApaBI
Bio.Restriction.Restriction.ApaI
Bio.Restriction.Restriction.ApaLI
Bio.Restriction.Restriction.ApeKI
Bio.Restriction.Restriction.ApoI
Bio.Restriction.Restriction.ApyPI
Bio.Restriction.Restriction.AquII
Bio.Restriction.Restriction.AquIII
Bio.Restriction.Restriction.AquIV
Bio.Restriction.Restriction.ArsI
Bio.Restriction.Restriction.AscI
Bio.Restriction.Restriction.AseI
Bio.Restriction.Restriction.Asi256I
Bio.Restriction.Restriction.AsiGI
Bio.Restriction.Restriction.AsiSI
Bio.Restriction.Restriction.Asp700I
Bio.Restriction.Restriction.Asp718I
Bio.Restriction.Restriction.AspA2I
Bio.Restriction.Restriction.AspBHI
Bio.Restriction.Restriction.AspLEI
Bio.Restriction.Restriction.AspS9I
Bio.Restriction.Restriction.AssI
Bio.Restriction.Restriction.AsuC2I
Bio.Restriction.Restriction.AsuHPI
Bio.Restriction.Restriction.AsuI
Bio.Restriction.Restriction.AsuII
Bio.Restriction.Restriction.AsuNHI
Bio.Restriction.Restriction.AvaI
Bio.Restriction.Restriction.AvaII
Bio.Restriction.Restriction.AvaIII
Bio.Restriction.Restriction.AvrII
Bio.Restriction.Restriction.AxyI
Bio.Restriction.Restriction.BaeGI
Bio.Restriction.Restriction.BaeI
Bio.Restriction.Restriction.BalI
Bio.Restriction.Restriction.BamHI
Bio.Restriction.Restriction.BanI
Bio.Restriction.Restriction.BanII
Bio.Restriction.Restriction.BarI
Bio.Restriction.Restriction.BasI
Bio.Restriction.Restriction.BauI
Bio.Restriction.Restriction.Bbr7I
Bio.Restriction.Restriction.BbrPI
Bio.Restriction.Restriction.BbsI
Bio.Restriction.Restriction.Bbv12I
Bio.Restriction.Restriction.BbvCI
Bio.Restriction.Restriction.BbvI
Bio.Restriction.Restriction.BbvII
Bio.Restriction.Restriction.BccI
Bio.Restriction.Restriction.Bce83I
Bio.Restriction.Restriction.BceAI
Bio.Restriction.Restriction.BcefI
Bio.Restriction.Restriction.BcgI
Bio.Restriction.Restriction.BciT130I
Bio.Restriction.Restriction.BciVI
Bio.Restriction.Restriction.BclI
Bio.Restriction.Restriction.BcnI
Bio.Restriction.Restriction.BcoDI
Bio.Restriction.Restriction.BcuI
Bio.Restriction.Restriction.BdaI
Bio.Restriction.Restriction.BetI
Bio.Restriction.Restriction.BfaI
Bio.Restriction.Restriction.BfiI
Bio.Restriction.Restriction.BfmI
Bio.Restriction.Restriction.BfoI
Bio.Restriction.Restriction.BfrI
Bio.Restriction.Restriction.BfuAI
Bio.Restriction.Restriction.BfuCI
Bio.Restriction.Restriction.BfuI
Bio.Restriction.Restriction.BglI
Bio.Restriction.Restriction.BglII
Bio.Restriction.Restriction.BinI
Bio.Restriction.Restriction.BisI
Bio.Restriction.Restriction.BlnI
Bio.Restriction.Restriction.BlpI
Bio.Restriction.Restriction.BlsI
Bio.Restriction.Restriction.Blunt
Bio.Restriction.Restriction.BmcAI
Bio.Restriction.Restriction.Bme1390I
Bio.Restriction.Restriction.Bme18I
Bio.Restriction.Restriction.BmeDI
Bio.Restriction.Restriction.BmeRI
Bio.Restriction.Restriction.BmeT110I
Bio.Restriction.Restriction.BmgBI
Bio.Restriction.Restriction.BmgI
Bio.Restriction.Restriction.BmgT120I
Bio.Restriction.Restriction.BmiI
Bio.Restriction.Restriction.BmrFI
Bio.Restriction.Restriction.BmrI
Bio.Restriction.Restriction.BmsI
Bio.Restriction.Restriction.BmtI
Bio.Restriction.Restriction.BmuI
Bio.Restriction.Restriction.BoxI
Bio.Restriction.Restriction.BpiI
Bio.Restriction.Restriction.BplI
Bio.Restriction.Restriction.BpmI
Bio.Restriction.Restriction.Bpu10I
Bio.Restriction.Restriction.Bpu1102I
Bio.Restriction.Restriction.Bpu14I
Bio.Restriction.Restriction.BpuEI
Bio.Restriction.Restriction.BpuMI
Bio.Restriction.Restriction.BpvUI
Bio.Restriction.Restriction.Bsa29I
Bio.Restriction.Restriction.BsaAI
Bio.Restriction.Restriction.BsaBI
Bio.Restriction.Restriction.BsaHI
Bio.Restriction.Restriction.BsaI
Bio.Restriction.Restriction.BsaJI
Bio.Restriction.Restriction.BsaWI
Bio.Restriction.Restriction.BsaXI
Bio.Restriction.Restriction.BsbI
Bio.Restriction.Restriction.Bsc4I
Bio.Restriction.Restriction.BscAI
Bio.Restriction.Restriction.BscGI
Bio.Restriction.Restriction.Bse118I
Bio.Restriction.Restriction.Bse1I
Bio.Restriction.Restriction.Bse21I
Bio.Restriction.Restriction.Bse3DI
Bio.Restriction.Restriction.Bse8I
Bio.Restriction.Restriction.BseAI
Bio.Restriction.Restriction.BseBI
Bio.Restriction.Restriction.BseCI
Bio.Restriction.Restriction.BseDI
Bio.Restriction.Restriction.BseGI
Bio.Restriction.Restriction.BseJI
Bio.Restriction.Restriction.BseLI
Bio.Restriction.Restriction.BseMI
Bio.Restriction.Restriction.BseMII
Bio.Restriction.Restriction.BseNI
Bio.Restriction.Restriction.BsePI
Bio.Restriction.Restriction.BseRI
Bio.Restriction.Restriction.BseSI
Bio.Restriction.Restriction.BseX3I
Bio.Restriction.Restriction.BseXI
Bio.Restriction.Restriction.BseYI
Bio.Restriction.Restriction.BsgI
Bio.Restriction.Restriction.Bsh1236I
Bio.Restriction.Restriction.Bsh1285I
Bio.Restriction.Restriction.BshFI
Bio.Restriction.Restriction.BshNI
Bio.Restriction.Restriction.BshTI
Bio.Restriction.Restriction.BshVI
Bio.Restriction.Restriction.BsiEI
Bio.Restriction.Restriction.BsiHKAI
Bio.Restriction.Restriction.BsiHKCI
Bio.Restriction.Restriction.BsiI
Bio.Restriction.Restriction.BsiSI
Bio.Restriction.Restriction.BsiWI
Bio.Restriction.Restriction.BsiYI
Bio.Restriction.Restriction.BslFI
Bio.Restriction.Restriction.BslI
Bio.Restriction.Restriction.BsmAI
Bio.Restriction.Restriction.BsmBI
Bio.Restriction.Restriction.BsmFI
Bio.Restriction.Restriction.BsmI
Bio.Restriction.Restriction.BsnI
Bio.Restriction.Restriction.Bso31I
Bio.Restriction.Restriction.BsoBI
Bio.Restriction.Restriction.Bsp119I
Bio.Restriction.Restriction.Bsp120I
Bio.Restriction.Restriction.Bsp1286I
Bio.Restriction.Restriction.Bsp13I
Bio.Restriction.Restriction.Bsp1407I
Bio.Restriction.Restriction.Bsp143I
Bio.Restriction.Restriction.Bsp1720I
Bio.Restriction.Restriction.Bsp19I
Bio.Restriction.Restriction.Bsp24I
Bio.Restriction.Restriction.Bsp68I
Bio.Restriction.Restriction.BspACI
Bio.Restriction.Restriction.BspCNI
Bio.Restriction.Restriction.BspD6I
Bio.Restriction.Restriction.BspDI
Bio.Restriction.Restriction.BspEI
Bio.Restriction.Restriction.BspFNI
Bio.Restriction.Restriction.BspGI
Bio.Restriction.Restriction.BspHI
Bio.Restriction.Restriction.BspLI
Bio.Restriction.Restriction.BspLU11I
Bio.Restriction.Restriction.BspMI
Bio.Restriction.Restriction.BspMII
Bio.Restriction.Restriction.BspNCI
Bio.Restriction.Restriction.BspOI
Bio.Restriction.Restriction.BspPI
Bio.Restriction.Restriction.BspQI
Bio.Restriction.Restriction.BspT104I
Bio.Restriction.Restriction.BspT107I
Bio.Restriction.Restriction.BspTI
Bio.Restriction.Restriction.BsrBI
Bio.Restriction.Restriction.BsrDI
Bio.Restriction.Restriction.BsrFI
Bio.Restriction.Restriction.BsrGI
Bio.Restriction.Restriction.BsrI
Bio.Restriction.Restriction.BsrSI
Bio.Restriction.Restriction.BssAI
Bio.Restriction.Restriction.BssECI
Bio.Restriction.Restriction.BssHII
Bio.Restriction.Restriction.BssKI
Bio.Restriction.Restriction.BssMI
Bio.Restriction.Restriction.BssNAI
Bio.Restriction.Restriction.BssNI
Bio.Restriction.Restriction.BssSI
Bio.Restriction.Restriction.BssT1I
Bio.Restriction.Restriction.Bst1107I
Bio.Restriction.Restriction.Bst2BI
Bio.Restriction.Restriction.Bst2UI
Bio.Restriction.Restriction.Bst4CI
Bio.Restriction.Restriction.Bst6I
Bio.Restriction.Restriction.BstACI
Bio.Restriction.Restriction.BstAFI
Bio.Restriction.Restriction.BstAPI
Bio.Restriction.Restriction.BstAUI
Bio.Restriction.Restriction.BstBAI
Bio.Restriction.Restriction.BstBI
Bio.Restriction.Restriction.BstC8I
Bio.Restriction.Restriction.BstDEI
Bio.Restriction.Restriction.BstDSI
Bio.Restriction.Restriction.BstEII
Bio.Restriction.Restriction.BstENI
Bio.Restriction.Restriction.BstF5I
Bio.Restriction.Restriction.BstFNI
Bio.Restriction.Restriction.BstH2I
Bio.Restriction.Restriction.BstHHI
Bio.Restriction.Restriction.BstKTI
Bio.Restriction.Restriction.BstMAI
Bio.Restriction.Restriction.BstMBI
Bio.Restriction.Restriction.BstMCI
Bio.Restriction.Restriction.BstMWI
Bio.Restriction.Restriction.BstNI
Bio.Restriction.Restriction.BstNSI
Bio.Restriction.Restriction.BstOI
Bio.Restriction.Restriction.BstPAI
Bio.Restriction.Restriction.BstPI
Bio.Restriction.Restriction.BstSCI
Bio.Restriction.Restriction.BstSFI
Bio.Restriction.Restriction.BstSLI
Bio.Restriction.Restriction.BstSNI
Bio.Restriction.Restriction.BstUI
Bio.Restriction.Restriction.BstV1I
Bio.Restriction.Restriction.BstV2I
Bio.Restriction.Restriction.BstX2I
Bio.Restriction.Restriction.BstXI
Bio.Restriction.Restriction.BstYI
Bio.Restriction.Restriction.BstZ17I
Bio.Restriction.Restriction.BstZI
Bio.Restriction.Restriction.Bsu15I
Bio.Restriction.Restriction.Bsu36I
Bio.Restriction.Restriction.BsuI
Bio.Restriction.Restriction.BsuRI
Bio.Restriction.Restriction.BtgI
Bio.Restriction.Restriction.BtgZI
Bio.Restriction.Restriction.BthCI
Bio.Restriction.Restriction.BtrI
Bio.Restriction.Restriction.BtsCI
Bio.Restriction.Restriction.BtsI
Bio.Restriction.Restriction.BtsIMutI
Bio.Restriction.Restriction.BtuMI
Bio.Restriction.Restriction.BveI
Bio.Restriction.Restriction.Cac8I
Bio.Restriction.Restriction.CaiI
Bio.Restriction.Restriction.CauII
Bio.Restriction.Restriction.CchII
Bio.Restriction.Restriction.CchIII
Bio.Restriction.Restriction.CciI
Bio.Restriction.Restriction.CciNI
Bio.Restriction.Restriction.Cdi630V
Bio.Restriction.Restriction.CdiI
Bio.Restriction.Restriction.CdpI
Bio.Restriction.Restriction.CfoI
Bio.Restriction.Restriction.Cfr10I
Bio.Restriction.Restriction.Cfr13I
Bio.Restriction.Restriction.Cfr42I
Bio.Restriction.Restriction.Cfr9I
Bio.Restriction.Restriction.CfrI
Bio.Restriction.Restriction.Cgl13032I
Bio.Restriction.Restriction.Cgl13032II
Bio.Restriction.Restriction.ChaI
Bio.Restriction.Restriction.CjeFIII
Bio.Restriction.Restriction.CjeFV
Bio.Restriction.Restriction.CjeI
Bio.Restriction.Restriction.CjeNII
Bio.Restriction.Restriction.CjeNIII
Bio.Restriction.Restriction.CjeP659IV
Bio.Restriction.Restriction.CjePI
Bio.Restriction.Restriction.CjuI
Bio.Restriction.Restriction.CjuII
Bio.Restriction.Restriction.ClaI
Bio.Restriction.Restriction.Commercially_available
Bio.Restriction.Restriction.CpoI
Bio.Restriction.Restriction.CseI
Bio.Restriction.Restriction.CsiI
Bio.Restriction.Restriction.Csp6I
Bio.Restriction.Restriction.CspAI
Bio.Restriction.Restriction.CspCI
Bio.Restriction.Restriction.CspI
Bio.Restriction.Restriction.CstMI
Bio.Restriction.Restriction.CviAII
Bio.Restriction.Restriction.CviJI
Bio.Restriction.Restriction.CviKI_1
Bio.Restriction.Restriction.CviQI
Bio.Restriction.Restriction.CviRI
Bio.Restriction.Restriction.DdeI
Bio.Restriction.Restriction.Defined
Bio.Restriction.Restriction.DinI
Bio.Restriction.Restriction.DpnI
Bio.Restriction.Restriction.DpnII
Bio.Restriction.Restriction.DraI
Bio.Restriction.Restriction.DraII
Bio.Restriction.Restriction.DraIII
Bio.Restriction.Restriction.DraRI
Bio.Restriction.Restriction.DrdI
Bio.Restriction.Restriction.DrdII
Bio.Restriction.Restriction.DriI
Bio.Restriction.Restriction.DsaI
Bio.Restriction.Restriction.DseDI
Bio.Restriction.Restriction.EaeI
Bio.Restriction.Restriction.EagI
Bio.Restriction.Restriction.Eam1104I
Bio.Restriction.Restriction.Eam1105I
Bio.Restriction.Restriction.EarI
Bio.Restriction.Restriction.EciI
Bio.Restriction.Restriction.Ecl136II
Bio.Restriction.Restriction.EclXI
Bio.Restriction.Restriction.Eco105I
Bio.Restriction.Restriction.Eco130I
Bio.Restriction.Restriction.Eco147I
Bio.Restriction.Restriction.Eco24I
Bio.Restriction.Restriction.Eco31I
Bio.Restriction.Restriction.Eco32I
Bio.Restriction.Restriction.Eco47I
Bio.Restriction.Restriction.Eco47III
Bio.Restriction.Restriction.Eco52I
Bio.Restriction.Restriction.Eco53kI
Bio.Restriction.Restriction.Eco57I
Bio.Restriction.Restriction.Eco57MI
Bio.Restriction.Restriction.Eco72I
Bio.Restriction.Restriction.Eco81I
Bio.Restriction.Restriction.Eco88I
Bio.Restriction.Restriction.Eco91I
Bio.Restriction.Restriction.EcoHI
Bio.Restriction.Restriction.EcoICRI
Bio.Restriction.Restriction.EcoNI
Bio.Restriction.Restriction.EcoO109I
Bio.Restriction.Restriction.EcoO65I
Bio.Restriction.Restriction.EcoRI
Bio.Restriction.Restriction.EcoRII
Bio.Restriction.Restriction.EcoRV
Bio.Restriction.Restriction.EcoT14I
Bio.Restriction.Restriction.EcoT22I
Bio.Restriction.Restriction.EcoT38I
Bio.Restriction.Restriction.EgeI
Bio.Restriction.Restriction.EheI
Bio.Restriction.Restriction.ErhI
Bio.Restriction.Restriction.EsaBC3I
Bio.Restriction.Restriction.EsaSSI
Bio.Restriction.Restriction.Esp3I
Bio.Restriction.Restriction.EspI
Bio.Restriction.Restriction.FaeI
Bio.Restriction.Restriction.FaiI
Bio.Restriction.Restriction.FalI
Bio.Restriction.Restriction.FaqI
Bio.Restriction.Restriction.FatI
Bio.Restriction.Restriction.FauI
Bio.Restriction.Restriction.FauNDI
Bio.Restriction.Restriction.FbaI
Bio.Restriction.Restriction.FblI
Bio.Restriction.Restriction.FinI
Bio.Restriction.Restriction.FmuI
Bio.Restriction.Restriction.Fnu4HI
Bio.Restriction.Restriction.FnuDII
Bio.Restriction.Restriction.FokI
Bio.Restriction.Restriction.FormattedSeq
Bio.Restriction.Restriction.FriOI
Bio.Restriction.Restriction.FseI
Bio.Restriction.Restriction.Fsp4HI
Bio.Restriction.Restriction.FspAI
Bio.Restriction.Restriction.FspBI
Bio.Restriction.Restriction.FspEI
Bio.Restriction.Restriction.FspI
Bio.Restriction.Restriction.GauT27I
Bio.Restriction.Restriction.GdiII
Bio.Restriction.Restriction.GlaI
Bio.Restriction.Restriction.GluI
Bio.Restriction.Restriction.GsaI
Bio.Restriction.Restriction.GsuI
Bio.Restriction.Restriction.HaeI
Bio.Restriction.Restriction.HaeII
Bio.Restriction.Restriction.HaeIII
Bio.Restriction.Restriction.HapII
Bio.Restriction.Restriction.HauII
Bio.Restriction.Restriction.HgaI
Bio.Restriction.Restriction.HgiAI
Bio.Restriction.Restriction.HgiCI
Bio.Restriction.Restriction.HgiEII
Bio.Restriction.Restriction.HgiJII
Bio.Restriction.Restriction.HhaI
Bio.Restriction.Restriction.Hin1I
Bio.Restriction.Restriction.Hin1II
Bio.Restriction.Restriction.Hin4I
Bio.Restriction.Restriction.Hin4II
Bio.Restriction.Restriction.Hin6I
Bio.Restriction.Restriction.HinP1I
Bio.Restriction.Restriction.HincII
Bio.Restriction.Restriction.HindII
Bio.Restriction.Restriction.HindIII
Bio.Restriction.Restriction.HinfI
Bio.Restriction.Restriction.HpaI
Bio.Restriction.Restriction.HpaII
Bio.Restriction.Restriction.HphI
Bio.Restriction.Restriction.Hpy166II
Bio.Restriction.Restriction.Hpy178III
Bio.Restriction.Restriction.Hpy188I
Bio.Restriction.Restriction.Hpy188III
Bio.Restriction.Restriction.Hpy8I
Bio.Restriction.Restriction.Hpy99I
Bio.Restriction.Restriction.Hpy99XIII
Bio.Restriction.Restriction.Hpy99XIV
Bio.Restriction.Restriction.HpyAV
Bio.Restriction.Restriction.HpyCH4III
Bio.Restriction.Restriction.HpyCH4IV
Bio.Restriction.Restriction.HpyCH4V
Bio.Restriction.Restriction.HpyF10VI
Bio.Restriction.Restriction.HpyF3I
Bio.Restriction.Restriction.HpySE526I
Bio.Restriction.Restriction.Hsp92I
Bio.Restriction.Restriction.Hsp92II
Bio.Restriction.Restriction.HspAI
Bio.Restriction.Restriction.Jma19592I
Bio.Restriction.Restriction.KasI
Bio.Restriction.Restriction.KflI
Bio.Restriction.Restriction.Kpn2I
Bio.Restriction.Restriction.KpnI
Bio.Restriction.Restriction.KroI
Bio.Restriction.Restriction.Ksp22I
Bio.Restriction.Restriction.Ksp632I
Bio.Restriction.Restriction.KspAI
Bio.Restriction.Restriction.KspI
Bio.Restriction.Restriction.Kzo9I
Bio.Restriction.Restriction.LguI
Bio.Restriction.Restriction.LpnI
Bio.Restriction.Restriction.LpnPI
Bio.Restriction.Restriction.Lsp1109I
Bio.Restriction.Restriction.LweI
Bio.Restriction.Restriction.MabI
Bio.Restriction.Restriction.MaeI
Bio.Restriction.Restriction.MaeII
Bio.Restriction.Restriction.MaeIII
Bio.Restriction.Restriction.MalI
Bio.Restriction.Restriction.MaqI
Bio.Restriction.Restriction.MauBI
Bio.Restriction.Restriction.MbiI
Bio.Restriction.Restriction.MboI
Bio.Restriction.Restriction.MboII
Bio.Restriction.Restriction.McaTI
Bio.Restriction.Restriction.McrI
Bio.Restriction.Restriction.Meth_Dep
Bio.Restriction.Restriction.Meth_Undep
Bio.Restriction.Restriction.MfeI
Bio.Restriction.Restriction.MflI
Bio.Restriction.Restriction.MhlI
Bio.Restriction.Restriction.MjaIV
Bio.Restriction.Restriction.MkaDII
Bio.Restriction.Restriction.MlsI
Bio.Restriction.Restriction.MluCI
Bio.Restriction.Restriction.MluI
Bio.Restriction.Restriction.MluNI
Bio.Restriction.Restriction.Mly113I
Bio.Restriction.Restriction.MlyI
Bio.Restriction.Restriction.MmeI
Bio.Restriction.Restriction.MnlI
Bio.Restriction.Restriction.Mph1103I
Bio.Restriction.Restriction.MreI
Bio.Restriction.Restriction.MroI
Bio.Restriction.Restriction.MroNI
Bio.Restriction.Restriction.MroXI
Bio.Restriction.Restriction.MscI
Bio.Restriction.Restriction.MseI
Bio.Restriction.Restriction.MslI
Bio.Restriction.Restriction.Msp20I
Bio.Restriction.Restriction.MspA1I
Bio.Restriction.Restriction.MspCI
Bio.Restriction.Restriction.MspI
Bio.Restriction.Restriction.MspJI
Bio.Restriction.Restriction.MspR9I
Bio.Restriction.Restriction.MssI
Bio.Restriction.Restriction.MstI
Bio.Restriction.Restriction.MunI
Bio.Restriction.Restriction.Mva1269I
Bio.Restriction.Restriction.MvaI
Bio.Restriction.Restriction.MvnI
Bio.Restriction.Restriction.MvrI
Bio.Restriction.Restriction.MwoI
Bio.Restriction.Restriction.NaeI
Bio.Restriction.Restriction.NarI
Bio.Restriction.Restriction.NciI
Bio.Restriction.Restriction.NcoI
Bio.Restriction.Restriction.NdeI
Bio.Restriction.Restriction.NdeII
Bio.Restriction.Restriction.NgoAVIII
Bio.Restriction.Restriction.NgoMIV
Bio.Restriction.Restriction.NhaXI
Bio.Restriction.Restriction.NheI
Bio.Restriction.Restriction.NlaCI
Bio.Restriction.Restriction.NlaIII
Bio.Restriction.Restriction.NlaIV
Bio.Restriction.Restriction.Nli3877I
Bio.Restriction.Restriction.NmeAIII
Bio.Restriction.Restriction.NmeDI
Bio.Restriction.Restriction.NmuCI
Bio.Restriction.Restriction.NoCut
Bio.Restriction.Restriction.NonPalindromic
Bio.Restriction.Restriction.NotDefined
Bio.Restriction.Restriction.NotI
Bio.Restriction.Restriction.Not_available
Bio.Restriction.Restriction.NruI
Bio.Restriction.Restriction.NsbI
Bio.Restriction.Restriction.NsiI
Bio.Restriction.Restriction.NspBII
Bio.Restriction.Restriction.NspI
Bio.Restriction.Restriction.NspV
Bio.Restriction.Restriction.OliI
Bio.Restriction.Restriction.OneCut
Bio.Restriction.Restriction.Ov3
Bio.Restriction.Restriction.Ov5
Bio.Restriction.Restriction.PabI
Bio.Restriction.Restriction.PacI
Bio.Restriction.Restriction.PaeI
Bio.Restriction.Restriction.PaeR7I
Bio.Restriction.Restriction.PagI
Bio.Restriction.Restriction.PalAI
Bio.Restriction.Restriction.Palindromic
Bio.Restriction.Restriction.PasI
Bio.Restriction.Restriction.PauI
Bio.Restriction.Restriction.PceI
Bio.Restriction.Restriction.PciI
Bio.Restriction.Restriction.PciSI
Bio.Restriction.Restriction.PcsI
Bio.Restriction.Restriction.PctI
Bio.Restriction.Restriction.PdiI
Bio.Restriction.Restriction.PdmI
Bio.Restriction.Restriction.PenI
Bio.Restriction.Restriction.PfeI
Bio.Restriction.Restriction.Pfl1108I
Bio.Restriction.Restriction.Pfl23II
Bio.Restriction.Restriction.PflFI
Bio.Restriction.Restriction.PflMI
Bio.Restriction.Restriction.PfoI
Bio.Restriction.Restriction.PinAI
Bio.Restriction.Restriction.PlaDI
Bio.Restriction.Restriction.Ple19I
Bio.Restriction.Restriction.PleI
Bio.Restriction.Restriction.PluTI
Bio.Restriction.Restriction.PmaCI
Bio.Restriction.Restriction.PmeI
Bio.Restriction.Restriction.PmlI
Bio.Restriction.Restriction.PpiI
Bio.Restriction.Restriction.PpsI
Bio.Restriction.Restriction.Ppu10I
Bio.Restriction.Restriction.Ppu21I
Bio.Restriction.Restriction.PpuMI
Bio.Restriction.Restriction.PscI
Bio.Restriction.Restriction.PshAI
Bio.Restriction.Restriction.PshBI
Bio.Restriction.Restriction.PsiI
Bio.Restriction.Restriction.Psp03I
Bio.Restriction.Restriction.Psp124BI
Bio.Restriction.Restriction.Psp1406I
Bio.Restriction.Restriction.Psp5II
Bio.Restriction.Restriction.Psp6I
Bio.Restriction.Restriction.PspCI
Bio.Restriction.Restriction.PspEI
Bio.Restriction.Restriction.PspGI
Bio.Restriction.Restriction.PspLI
Bio.Restriction.Restriction.PspN4I
Bio.Restriction.Restriction.PspOMI
Bio.Restriction.Restriction.PspOMII
Bio.Restriction.Restriction.PspPI
Bio.Restriction.Restriction.PspPPI
Bio.Restriction.Restriction.PspPRI
Bio.Restriction.Restriction.PspXI
Bio.Restriction.Restriction.PsrI
Bio.Restriction.Restriction.PssI
Bio.Restriction.Restriction.PstI
Bio.Restriction.Restriction.PstNI
Bio.Restriction.Restriction.PsuI
Bio.Restriction.Restriction.PsyI
Bio.Restriction.Restriction.PteI
Bio.Restriction.Restriction.PvuI
Bio.Restriction.Restriction.PvuII
Bio.Restriction.Restriction.R2_BceSIV
Bio.Restriction.Restriction.RceI
Bio.Restriction.Restriction.RdeGBI
Bio.Restriction.Restriction.RdeGBII
Bio.Restriction.Restriction.RdeGBIII
Bio.Restriction.Restriction.RestrictionBatch
Bio.Restriction.Restriction.RestrictionType
Bio.Restriction.Restriction.RflFIII
Bio.Restriction.Restriction.RgaI
Bio.Restriction.Restriction.RigI
Bio.Restriction.Restriction.RlaI
Bio.Restriction.Restriction.RleAI
Bio.Restriction.Restriction.RpaB5I
Bio.Restriction.Restriction.RpaBI
Bio.Restriction.Restriction.RpaI
Bio.Restriction.Restriction.RpaTI
Bio.Restriction.Restriction.RruI
Bio.Restriction.Restriction.RsaI
Bio.Restriction.Restriction.RsaNI
Bio.Restriction.Restriction.RseI
Bio.Restriction.Restriction.Rsr2I
Bio.Restriction.Restriction.RsrII
Bio.Restriction.Restriction.SacI
Bio.Restriction.Restriction.SacII
Bio.Restriction.Restriction.SalI
Bio.Restriction.Restriction.SanDI
Bio.Restriction.Restriction.SapI
Bio.Restriction.Restriction.SaqAI
Bio.Restriction.Restriction.SatI
Bio.Restriction.Restriction.Sau3AI
Bio.Restriction.Restriction.Sau96I
Bio.Restriction.Restriction.SauI
Bio.Restriction.Restriction.SbfI
Bio.Restriction.Restriction.ScaI
Bio.Restriction.Restriction.SchI
Bio.Restriction.Restriction.SciI
Bio.Restriction.Restriction.ScrFI
Bio.Restriction.Restriction.SdaI
Bio.Restriction.Restriction.SdeAI
Bio.Restriction.Restriction.SdeOSI
Bio.Restriction.Restriction.SduI
Bio.Restriction.Restriction.SecI
Bio.Restriction.Restriction.SelI
Bio.Restriction.Restriction.SetI
Bio.Restriction.Restriction.SexAI
Bio.Restriction.Restriction.SfaAI
Bio.Restriction.Restriction.SfaNI
Bio.Restriction.Restriction.SfcI
Bio.Restriction.Restriction.SfeI
Bio.Restriction.Restriction.SfiI
Bio.Restriction.Restriction.SfoI
Bio.Restriction.Restriction.Sfr274I
Bio.Restriction.Restriction.Sfr303I
Bio.Restriction.Restriction.SfuI
Bio.Restriction.Restriction.SgeI
Bio.Restriction.Restriction.SgfI
Bio.Restriction.Restriction.SgrAI
Bio.Restriction.Restriction.SgrBI
Bio.Restriction.Restriction.SgrDI
Bio.Restriction.Restriction.SgrTI
Bio.Restriction.Restriction.SgsI
Bio.Restriction.Restriction.SimI
Bio.Restriction.Restriction.SlaI
Bio.Restriction.Restriction.SmaI
Bio.Restriction.Restriction.SmiI
Bio.Restriction.Restriction.SmiMI
Bio.Restriction.Restriction.SmlI
Bio.Restriction.Restriction.SmoI
Bio.Restriction.Restriction.SnaBI
Bio.Restriction.Restriction.SnaI
Bio.Restriction.Restriction.Sno506I
Bio.Restriction.Restriction.SpeI
Bio.Restriction.Restriction.SphI
Bio.Restriction.Restriction.SplI
Bio.Restriction.Restriction.SpoDI
Bio.Restriction.Restriction.SrfI
Bio.Restriction.Restriction.Sse232I
Bio.Restriction.Restriction.Sse8387I
Bio.Restriction.Restriction.Sse8647I
Bio.Restriction.Restriction.Sse9I
Bio.Restriction.Restriction.SseBI
Bio.Restriction.Restriction.SsiI
Bio.Restriction.Restriction.SspD5I
Bio.Restriction.Restriction.SspDI
Bio.Restriction.Restriction.SspI
Bio.Restriction.Restriction.SstE37I
Bio.Restriction.Restriction.SstI
Bio.Restriction.Restriction.Sth132I
Bio.Restriction.Restriction.Sth302II
Bio.Restriction.Restriction.StrI
Bio.Restriction.Restriction.StsI
Bio.Restriction.Restriction.StuI
Bio.Restriction.Restriction.StyD4I
Bio.Restriction.Restriction.StyI
Bio.Restriction.Restriction.SwaI
Bio.Restriction.Restriction.T
Bio.Restriction.Restriction.TaaI
Bio.Restriction.Restriction.TaiI
Bio.Restriction.Restriction.TaqI
Bio.Restriction.Restriction.TaqII
Bio.Restriction.Restriction.TasI
Bio.Restriction.Restriction.TatI
Bio.Restriction.Restriction.TauI
Bio.Restriction.Restriction.TfiI
Bio.Restriction.Restriction.Tru1I
Bio.Restriction.Restriction.Tru9I
Bio.Restriction.Restriction.TscAI
Bio.Restriction.Restriction.TseFI
Bio.Restriction.Restriction.TseI
Bio.Restriction.Restriction.TsoI
Bio.Restriction.Restriction.Tsp45I
Bio.Restriction.Restriction.Tsp4CI
Bio.Restriction.Restriction.TspDTI
Bio.Restriction.Restriction.TspEI
Bio.Restriction.Restriction.TspGWI
Bio.Restriction.Restriction.TspMI
Bio.Restriction.Restriction.TspRI
Bio.Restriction.Restriction.TssI
Bio.Restriction.Restriction.TstI
Bio.Restriction.Restriction.TsuI
Bio.Restriction.Restriction.Tth111I
Bio.Restriction.Restriction.Tth111II
Bio.Restriction.Restriction.TwoCuts
Bio.Restriction.Restriction.UbaF11I
Bio.Restriction.Restriction.UbaF12I
Bio.Restriction.Restriction.UbaF13I
Bio.Restriction.Restriction.UbaF14I
Bio.Restriction.Restriction.UbaF9I
Bio.Restriction.Restriction.UbaPI
Bio.Restriction.Restriction.UcoMSI
Bio.Restriction.Restriction.UnbI
Bio.Restriction.Restriction.Unknown
Bio.Restriction.Restriction.Van91I
Bio.Restriction.Restriction.Vha464I
Bio.Restriction.Restriction.VneI
Bio.Restriction.Restriction.VpaK11AI
Bio.Restriction.Restriction.VpaK11BI
Bio.Restriction.Restriction.VspI
Bio.Restriction.Restriction.WviI
Bio.Restriction.Restriction.XagI
Bio.Restriction.Restriction.XapI
Bio.Restriction.Restriction.XbaI
Bio.Restriction.Restriction.XceI
Bio.Restriction.Restriction.XcmI
Bio.Restriction.Restriction.XhoI
Bio.Restriction.Restriction.XhoII
Bio.Restriction.Restriction.XmaI
Bio.Restriction.Restriction.XmaIII
Bio.Restriction.Restriction.XmaJI
Bio.Restriction.Restriction.XmiI
Bio.Restriction.Restriction.XmnI
Bio.Restriction.Restriction.XspI
Bio.Restriction.Restriction.YkrI
Bio.Restriction.Restriction.ZraI
Bio.Restriction.Restriction.ZrmI
Bio.Restriction.Restriction.Zsp2I
Bio.SCOP.Astral
Bio.SCOP.Cla.Index
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Record
Bio.SCOP.Domain
Bio.SCOP.Hie.Record
Bio.SCOP.Node
Bio.SCOP.Raf.Res
Bio.SCOP.Raf.SeqMap
Bio.SCOP.Raf.SeqMapIndex
Bio.SCOP.Residues.Residues
Bio.SCOP.Scop
Bio.SVDSuperimposer.SVDSuperimposer
Bio.SearchIO.BlastIO.blast_tab.BlastTabIndexer
Bio.SearchIO.BlastIO.blast_tab.BlastTabParser
Bio.SearchIO.BlastIO.blast_tab.BlastTabWriter
Bio.SearchIO.BlastIO.blast_text.BlastTextParser
Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer
Bio.SearchIO.BlastIO.blast_xml.BlastXmlParser
Bio.SearchIO.BlastIO.blast_xml.BlastXmlWriter
Bio.SearchIO.BlastIO.blast_xml._BlastXmlGenerator
Bio.SearchIO.BlatIO.BlatPslIndexer
Bio.SearchIO.BlatIO.BlatPslParser
Bio.SearchIO.BlatIO.BlatPslWriter
Bio.SearchIO.ExonerateIO._base._BaseExonerateIndexer
Bio.SearchIO.ExonerateIO._base._BaseExonerateParser
Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarIndexer
Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarParser
Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer
Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextParser
Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexer
Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarParser
Bio.SearchIO.FastaIO.FastaM10Indexer
Bio.SearchIO.FastaIO.FastaM10Parser
Bio.SearchIO.HmmerIO._base._BaseHmmerTextIndexer
Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextIndexer
Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser
Bio.SearchIO.HmmerIO.hmmer2_text._HitPlaceholder
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitIndexer
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitParser
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitWriter
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryIndexer
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryParser
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryWriter
Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabParser
Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabIndexer
Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabParser
Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabWriter
Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer
Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextParser
Bio.SearchIO._index.SearchIndexer
Bio.SearchIO._model._base._BaseHSP
Bio.SearchIO._model._base._BaseSearchObject
Bio.SearchIO._model.hit.Hit
Bio.SearchIO._model.hsp.HSP
Bio.SearchIO._model.hsp.HSPFragment
Bio.SearchIO._model.query.QueryResult
Bio.Seq.MutableSeq
Bio.Seq.Seq
Bio.Seq.UnknownSeq
Bio.SeqFeature.AbstractPosition
Bio.SeqFeature.AfterPosition
Bio.SeqFeature.BeforePosition
Bio.SeqFeature.BetweenPosition
Bio.SeqFeature.CompoundLocation
Bio.SeqFeature.ExactPosition
Bio.SeqFeature.FeatureLocation
Bio.SeqFeature.OneOfPosition
Bio.SeqFeature.PositionGap
Bio.SeqFeature.Reference
Bio.SeqFeature.SeqFeature
Bio.SeqFeature.UncertainPosition
Bio.SeqFeature.UnknownPosition
Bio.SeqFeature.WithinPosition
Bio.SeqIO.FastaIO.FastaWriter
Bio.SeqIO.InsdcIO.EmblWriter
Bio.SeqIO.InsdcIO.GenBankWriter
Bio.SeqIO.InsdcIO.ImgtWriter
Bio.SeqIO.InsdcIO._InsdcWriter
Bio.SeqIO.Interfaces.SequenceIterator
Bio.SeqIO.Interfaces.SequenceWriter
Bio.SeqIO.Interfaces.SequentialSequenceWriter
Bio.SeqIO.PhdIO.PhdWriter
Bio.SeqIO.QualityIO.FastqIlluminaWriter
Bio.SeqIO.QualityIO.FastqPhredWriter
Bio.SeqIO.QualityIO.FastqSolexaWriter
Bio.SeqIO.QualityIO.QualPhredWriter
Bio.SeqIO.SeqXmlIO.SeqXmlIterator
Bio.SeqIO.SeqXmlIO.SeqXmlWriter
Bio.SeqIO.SeqXmlIO.XMLRecordIterator
Bio.SeqIO.SffIO.SffWriter
Bio.SeqIO.SffIO._AddTellHandle
Bio.SeqIO.TabIO.TabWriter
Bio.SeqIO.UniprotIO.Parser
Bio.SeqIO._index.EmblRandomAccess
Bio.SeqIO._index.FastqRandomAccess
Bio.SeqIO._index.GenBankRandomAccess
Bio.SeqIO._index.IntelliGeneticsRandomAccess
Bio.SeqIO._index.SeqFileRandomAccess
Bio.SeqIO._index.SequentialSeqFileRandomAccess
Bio.SeqIO._index.SffRandomAccess
Bio.SeqIO._index.SffTrimedRandomAccess
Bio.SeqIO._index.SwissRandomAccess
Bio.SeqIO._index.TabRandomAccess
Bio.SeqIO._index.UniprotRandomAccess
Bio.SeqRecord.SeqRecord
Bio.SeqRecord._RestrictedDict
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint
Bio.SeqUtils.ProtParam.ProteinAnalysis
Bio.Sequencing.Ace.ACEFileRecord
Bio.Sequencing.Ace.Contig
Bio.Sequencing.Ace.Reads
Bio.Sequencing.Ace.af
Bio.Sequencing.Ace.bs
Bio.Sequencing.Ace.ct
Bio.Sequencing.Ace.ds
Bio.Sequencing.Ace.qa
Bio.Sequencing.Ace.rd
Bio.Sequencing.Ace.rt
Bio.Sequencing.Ace.wa
Bio.Sequencing.Ace.wr
Bio.Sequencing.Applications._Novoalign.NovoalignCommandline
Bio.Sequencing.Applications._bwa.BwaAlignCommandline
Bio.Sequencing.Applications._bwa.BwaBwaswCommandline
Bio.Sequencing.Applications._bwa.BwaIndexCommandline
Bio.Sequencing.Applications._bwa.BwaSampeCommandline
Bio.Sequencing.Applications._bwa.BwaSamseCommandline
Bio.Sequencing.Applications._samtools.SamtoolsCalmdCommandline
Bio.Sequencing.Applications._samtools.SamtoolsCatCommandline
Bio.Sequencing.Applications._samtools.SamtoolsFaidxCommandline
Bio.Sequencing.Applications._samtools.SamtoolsFixmateCommandline
Bio.Sequencing.Applications._samtools.SamtoolsIdxstatsCommandline
Bio.Sequencing.Applications._samtools.SamtoolsIndexCommandline
Bio.Sequencing.Applications._samtools.SamtoolsMergeCommandline
Bio.Sequencing.Applications._samtools.SamtoolsMpileupCommandline
Bio.Sequencing.Applications._samtools.SamtoolsPhaseCommandline
Bio.Sequencing.Applications._samtools.SamtoolsReheaderCommandline
Bio.Sequencing.Applications._samtools.SamtoolsRmdupCommandline
Bio.Sequencing.Applications._samtools.SamtoolsSortCommandline
Bio.Sequencing.Applications._samtools.SamtoolsTargetcutCommandline
Bio.Sequencing.Applications._samtools.SamtoolsViewCommandline
Bio.Sequencing.Phd.Record
Bio.SubsMat.AcceptedReplacementsMatrix
Bio.SubsMat.ExpectedFrequencyMatrix
Bio.SubsMat.FreqTable.FreqTable
Bio.SubsMat.LogOddsMatrix
Bio.SubsMat.ObservedFrequencyMatrix
Bio.SubsMat.SeqMat
Bio.SubsMat.SubstitutionMatrix
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.Record
Bio.SwissProt.Reference
Bio.UniGene.ProtsimLine
Bio.UniGene.Record
Bio.UniGene.STSLine
Bio.UniGene.SequenceLine
Bio.Wise.dnal.Statistics
Bio.Wise.psw.Alignment
Bio.Wise.psw.AlignmentColumn
Bio.Wise.psw.AlignmentColumnFullException
Bio.Wise.psw.ColumnUnit
Bio._py3k._ordereddict.OrderedDict
Bio.bgzf.BgzfReader
Bio.bgzf.BgzfWriter
Bio.kNN.kNN
Bio.motifs.Instances
Bio.motifs.Motif
Bio.motifs.alignace.Record
Bio.motifs.applications._alignace.AlignAceCommandline
Bio.motifs.applications._alignace.CompareAceCommandline
Bio.motifs.applications._xxmotif.XXmotifCommandline
Bio.motifs.jaspar.Motif
Bio.motifs.jaspar.Record
Bio.motifs.jaspar.db.JASPAR5
Bio.motifs.mast.Record
Bio.motifs.matrix.FrequencyPositionMatrix
Bio.motifs.matrix.GenericPositionMatrix
Bio.motifs.matrix.PositionSpecificScoringMatrix
Bio.motifs.matrix.PositionWeightMatrix
Bio.motifs.meme.Instance
Bio.motifs.meme.Motif
Bio.motifs.meme.Record
Bio.motifs.thresholds.ScoreDistribution
Bio.motifs.transfac.Motif
Bio.motifs.transfac.Record
Bio.pairwise2.affine_penalty
Bio.pairwise2.dictionary_match
Bio.pairwise2.identity_match
BioSQL.BioSeq.DBSeq
BioSQL.BioSeq.DBSeqRecord
BioSQL.BioSeqDatabase.Adaptor
BioSQL.BioSeqDatabase.BioSeqDatabase
BioSQL.BioSeqDatabase.DBServer
BioSQL.BioSeqDatabase._CursorWrapper
BioSQL.DBUtils.Generic_dbutils
BioSQL.DBUtils.Mysql_dbutils
BioSQL.DBUtils.Pgdb_dbutils
BioSQL.DBUtils.Psycopg2_dbutils
BioSQL.DBUtils.Sqlite_dbutils
BioSQL.DBUtils._PostgreSQL_dbutils
BioSQL.Loader.DatabaseLoader
BioSQL.Loader.DatabaseRemover

All Functions

Bio.Affy.CelFile.read
Bio.Align.AlignInfo.print_info_content
Bio.Align.Applications._ClustalOmega._test
Bio.Align.Applications._Clustalw._test
Bio.Align.Applications._Dialign._test
Bio.Align.Applications._MSAProbs._test
Bio.Align.Applications._Muscle._test
Bio.Align.Applications._Prank._test
Bio.Align.Applications._Probcons._test
Bio.Align.Applications._TCoffee._test
Bio.Align.Generic._test
Bio.AlignIO.FastaIO.FastaM10Iterator
Bio.AlignIO.FastaIO._extract_alignment_region
Bio.AlignIO.NexusIO.NexusIterator
Bio.AlignIO._SeqIO_to_alignment_iterator
Bio.AlignIO._force_alphabet
Bio.AlignIO.convert
Bio.AlignIO.parse
Bio.AlignIO.read
Bio.AlignIO.write
Bio.Alphabet._check_type_compatible
Bio.Alphabet._consensus_alphabet
Bio.Alphabet._consensus_base_alphabet
Bio.Alphabet._get_base_alphabet
Bio.Alphabet._ungap
Bio.Alphabet._verify_alphabet
Bio.Application._escape_filename
Bio.Application._test
Bio.Blast.Applications._test
Bio.Blast.NCBIStandalone._get_cols
Bio.Blast.NCBIStandalone._re_search
Bio.Blast.NCBIStandalone._safe_float
Bio.Blast.NCBIStandalone._safe_int
Bio.Blast.NCBIWWW._parse_qblast_ref_page
Bio.Blast.NCBIWWW.qblast
Bio.Blast.NCBIXML.parse
Bio.Blast.NCBIXML.read
Bio.Cluster._savetree
Bio.Cluster._treesort
Bio.Cluster.cluster.clustercentroids
Bio.Cluster.cluster.clusterdistance
Bio.Cluster.cluster.distancematrix
Bio.Cluster.cluster.kcluster
Bio.Cluster.cluster.kmedoids
Bio.Cluster.cluster.mean
Bio.Cluster.cluster.median
Bio.Cluster.cluster.pca
Bio.Cluster.cluster.somcluster
Bio.Cluster.cluster.treecluster
Bio.Cluster.cluster.version
Bio.Cluster.read
Bio.CodonAlign.CodonAlignment'._G_test
Bio.CodonAlign.CodonAlignment'._count_replacement
Bio.CodonAlign.CodonAlignment'._dijkstra
Bio.CodonAlign.CodonAlignment'._get_codon2codon_matrix
Bio.CodonAlign.CodonAlignment'._get_subgraph
Bio.CodonAlign.CodonAlignment'._prim
Bio.CodonAlign.CodonAlignment'.mktest
Bio.CodonAlign.CodonAlphabet'.get_codon_alphabet
Bio.CodonAlign.CodonSeq'._count_diff_NG86
Bio.CodonAlign.CodonSeq'._count_diff_YN00
Bio.CodonAlign.CodonSeq'._count_site_NG86
Bio.CodonAlign.CodonSeq'._count_site_YN00
Bio.CodonAlign.CodonSeq'._diff_codon
Bio.CodonAlign.CodonSeq'._get_Q
Bio.CodonAlign.CodonSeq'._get_TV
Bio.CodonAlign.CodonSeq'._get_codon_fold
Bio.CodonAlign.CodonSeq'._get_codon_list
Bio.CodonAlign.CodonSeq'._get_kappa_t
Bio.CodonAlign.CodonSeq'._get_pi
Bio.CodonAlign.CodonSeq'._likelihood_func
Bio.CodonAlign.CodonSeq'._lwl85
Bio.CodonAlign.CodonSeq'._ml
Bio.CodonAlign.CodonSeq'._ng86
Bio.CodonAlign.CodonSeq'._q
Bio.CodonAlign.CodonSeq'._yn00
Bio.CodonAlign.CodonSeq'.cal_dn_ds
Bio.CodonAlign._align_shift_recs
Bio.CodonAlign._check_corr
Bio.CodonAlign._codons2re
Bio.CodonAlign._get_aa_regex
Bio.CodonAlign._get_codon_rec
Bio.CodonAlign._get_shift_anchor_re
Bio.CodonAlign._merge_aa2re
Bio.CodonAlign.build
Bio.CodonAlign.chisq._igam
Bio.CodonAlign.chisq._igamc
Bio.CodonAlign.chisq.chisqprob
Bio.Compass.__read_hit_alignment
Bio.Compass.__read_lengths
Bio.Compass.__read_names
Bio.Compass.__read_positive_alignment
Bio.Compass.__read_profilewidth
Bio.Compass.__read_query_alignment
Bio.Compass.__read_scores
Bio.Compass.__read_threshold
Bio.Compass.parse
Bio.Compass.read
Bio.Crystal.validate_key
Bio.Crystal.wrap_line
Bio.Data.CodonTable.list_ambiguous_codons
Bio.Data.CodonTable.list_possible_proteins
Bio.Data.CodonTable.make_back_table
Bio.Data.CodonTable.register_ncbi_table
Bio.Data.IUPACData._make_ambiguous_ranges
Bio.Data.IUPACData._make_ranges
Bio.DocSQL._check_is_public
Bio.DocSQL._test
Bio.Emboss.Applications._test
Bio.Emboss.Primer3.parse
Bio.Emboss.Primer3.read
Bio.Emboss.PrimerSearch.read
Bio.Entrez._open
Bio.Entrez._test
Bio.Entrez.efetch
Bio.Entrez.egquery
Bio.Entrez.einfo
Bio.Entrez.elink
Bio.Entrez.epost
Bio.Entrez.esearch
Bio.Entrez.espell
Bio.Entrez.esummary
Bio.Entrez.parse
Bio.Entrez.read
Bio.ExPASy.Enzyme.__read
Bio.ExPASy.Enzyme.parse
Bio.ExPASy.Enzyme.read
Bio.ExPASy.Prodoc.__read
Bio.ExPASy.Prodoc.__read_copyright_line
Bio.ExPASy.Prodoc.__read_prosite_reference_line
Bio.ExPASy.Prodoc.__read_reference_line
Bio.ExPASy.Prodoc.__read_reference_start
Bio.ExPASy.Prodoc.__read_text_line
Bio.ExPASy.Prodoc.parse
Bio.ExPASy.Prodoc.read
Bio.ExPASy.Prosite.__read
Bio.ExPASy.Prosite.parse
Bio.ExPASy.Prosite.read
Bio.ExPASy.ScanProsite.read
Bio.ExPASy.ScanProsite.scan
Bio.ExPASy.get_prodoc_entry
Bio.ExPASy.get_prosite_entry
Bio.ExPASy.get_prosite_raw
Bio.ExPASy.get_sprot_raw
Bio.ExPASy.sprot_search_de
Bio.ExPASy.sprot_search_ful
Bio.FSSP.FSSPTools.filter
Bio.FSSP.FSSPTools.mult_align
Bio.FSSP.FSSPTools.name_filter
Bio.FSSP.read_fssp
Bio.File._open_for_random_access
Bio.File.as_handle
Bio.GA.Organism.function_population
Bio.GA.Organism.random_population
Bio.GenBank.Record._indent_genbank
Bio.GenBank.Record._wrapped_genbank
Bio.Geo.Record.out_block
Bio.Geo._read_key_value
Bio.Geo.parse
Bio.Graphics.BasicChromosome._place_labels
Bio.Graphics.BasicChromosome._spring_layout
Bio.Graphics.ColorSpiral.get_color_dict
Bio.Graphics.ColorSpiral.get_colors
Bio.Graphics.GenomeDiagram._AbstractDrawer._stroke_and_fill_colors
Bio.Graphics.GenomeDiagram._AbstractDrawer.angle2trig
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_arrow
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_box
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_cut_corner_box
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_polygon
Bio.Graphics.GenomeDiagram._AbstractDrawer.intermediate_points
Bio.Graphics.GenomeDiagram._AbstractDrawer.page_sizes
Bio.Graphics._write
Bio.HMM.MarkovModel._calculate_emissions
Bio.HMM.MarkovModel._calculate_from_transitions
Bio.HMM.MarkovModel._calculate_to_transitions
Bio.HMM.MarkovModel._gen_random_array
Bio.HMM.Utilities.pretty_print_prediction
Bio.KDTree.KDTree'._dist
Bio.KDTree.KDTree'._neighbor_test
Bio.KDTree.KDTree'._test
Bio.KDTree.KDTree'.random
Bio.KEGG.Compound.id_wrap
Bio.KEGG.Compound.parse
Bio.KEGG.Compound.struct_wrap
Bio.KEGG.Enzyme.id_wrap
Bio.KEGG.Enzyme.parse
Bio.KEGG.Enzyme.struct_wrap
Bio.KEGG.Map.parse
Bio.KEGG._default_wrap
Bio.KEGG._wrap_kegg
Bio.KEGG._write_kegg
Bio.LogisticRegression.calculate
Bio.LogisticRegression.classify
Bio.LogisticRegression.train
Bio.MarkovModel._argmaxes
Bio.MarkovModel._backward
Bio.MarkovModel._baum_welch
Bio.MarkovModel._baum_welch_one
Bio.MarkovModel._copy_and_check
Bio.MarkovModel._exp_logsum
Bio.MarkovModel._forward
Bio.MarkovModel._logsum
Bio.MarkovModel._logvecadd
Bio.MarkovModel._mle
Bio.MarkovModel._normalize
Bio.MarkovModel._random_norm
Bio.MarkovModel._readline_and_check_start
Bio.MarkovModel._uniform_norm
Bio.MarkovModel._viterbi
Bio.MarkovModel.find_states
Bio.MarkovModel.itemindex
Bio.MarkovModel.load
Bio.MarkovModel.save
Bio.MarkovModel.train_bw
Bio.MarkovModel.train_visible
Bio.MaxEntropy._calc_empirical_expects
Bio.MaxEntropy._calc_f_sharp
Bio.MaxEntropy._calc_model_expects
Bio.MaxEntropy._calc_p_class_given_x
Bio.MaxEntropy._eval_feature_fn
Bio.MaxEntropy._iis_solve_delta
Bio.MaxEntropy._train_iis
Bio.MaxEntropy.calculate
Bio.MaxEntropy.classify
Bio.MaxEntropy.train
Bio.Medline.parse
Bio.Medline.read
Bio.Motif.Parsers.AlignAce.read
Bio.Motif.Parsers.MAST.__read_database_and_motifs
Bio.Motif.Parsers.MAST.__read_section_i
Bio.Motif.Parsers.MAST.__read_section_ii
Bio.Motif.Parsers.MAST.__read_section_iii
Bio.Motif.Parsers.MAST.__read_version
Bio.Motif.Parsers.MAST.read
Bio.Motif.Parsers.MEME.__create_motif
Bio.Motif.Parsers.MEME.__read_alphabet
Bio.Motif.Parsers.MEME.__read_command
Bio.Motif.Parsers.MEME.__read_datafile
Bio.Motif.Parsers.MEME.__read_motif_name
Bio.Motif.Parsers.MEME.__read_motif_sequences
Bio.Motif.Parsers.MEME.__read_sequence_names
Bio.Motif.Parsers.MEME.__read_version
Bio.Motif.Parsers.MEME.__skip_unused_lines
Bio.Motif.Parsers.MEME.read
Bio.Motif._from_pfm
Bio.Motif._from_sites
Bio.Motif._pwm.calculate
Bio.Motif.parse
Bio.Motif.read
Bio.NMR.NOEtools._col_ave
Bio.NMR.NOEtools._data_map
Bio.NMR.NOEtools.predictNOE
Bio.NMR.xpktools._find_start_entry
Bio.NMR.xpktools._read_dicts
Bio.NMR.xpktools.data_table
Bio.NMR.xpktools.replace_entry
Bio.NaiveBayes._contents
Bio.NaiveBayes.calculate
Bio.NaiveBayes.classify
Bio.NaiveBayes.train
Bio.NeuralNetwork.BackPropagation.Layer.logistic_function
Bio.NeuralNetwork.Gene.Schema.matches_schema
Bio.Nexus.Nexus._adjust_lines
Bio.Nexus.Nexus._compact4nexus
Bio.Nexus.Nexus._get_command_lines
Bio.Nexus.Nexus._kill_comments_and_break_lines
Bio.Nexus.Nexus._make_unique
Bio.Nexus.Nexus._replace_parenthesized_ambigs
Bio.Nexus.Nexus._seqmatrix2strmatrix
Bio.Nexus.Nexus._sort_keys_by_values
Bio.Nexus.Nexus._unique_label
Bio.Nexus.Nexus.combine
Bio.Nexus.Nexus.get_start_end
Bio.Nexus.Nexus.quotestrip
Bio.Nexus.Nexus.safename
Bio.Nexus.Trees.consensus
Bio.Nexus.cnexus.scanfile
Bio.PDB.DSSP'._make_dssp_dict
Bio.PDB.DSSP'.dssp_dict_from_pdb_file
Bio.PDB.DSSP'.make_dssp_dict
Bio.PDB.DSSP'.ss_to_index
Bio.PDB.Dice.extract
Bio.PDB.FragmentMapper'._make_fragment_list
Bio.PDB.FragmentMapper'._map_fragment_list
Bio.PDB.FragmentMapper'._read_fragments
Bio.PDB.NACCESS.process_asa_data
Bio.PDB.NACCESS.process_rsa_data
Bio.PDB.NACCESS.run_naccess
Bio.PDB.PSEA.annotate
Bio.PDB.PSEA.psea
Bio.PDB.PSEA.psea2HEC
Bio.PDB.PSEA.run_psea
Bio.PDB.Polypeptide.index_to_one
Bio.PDB.Polypeptide.index_to_three
Bio.PDB.Polypeptide.is_aa
Bio.PDB.Polypeptide.one_to_index
Bio.PDB.Polypeptide.one_to_three
Bio.PDB.Polypeptide.three_to_index
Bio.PDB.Polypeptide.three_to_one
Bio.PDB.ResidueDepth'._read_vertex_array
Bio.PDB.ResidueDepth'.ca_depth
Bio.PDB.ResidueDepth'.get_surface
Bio.PDB.ResidueDepth'.min_dist
Bio.PDB.ResidueDepth'.residue_depth
Bio.PDB.Selection._test
Bio.PDB.Selection.get_unique_parents
Bio.PDB.Selection.unfold_entities
Bio.PDB.Selection.uniqueify
Bio.PDB.Vector'.calc_angle
Bio.PDB.Vector'.calc_dihedral
Bio.PDB.Vector'.m2rotaxis
Bio.PDB.Vector'.refmat
Bio.PDB.Vector'.rotaxis
Bio.PDB.Vector'.rotmat
Bio.PDB.Vector'.vector_to_axis
Bio.PDB.parse_pdb_header'._chop_end_codes
Bio.PDB.parse_pdb_header'._chop_end_misc
Bio.PDB.parse_pdb_header'._format_date
Bio.PDB.parse_pdb_header'._get_journal
Bio.PDB.parse_pdb_header'._get_references
Bio.PDB.parse_pdb_header'._nice_case
Bio.PDB.parse_pdb_header'._parse_pdb_header_list
Bio.PDB.parse_pdb_header'.parse_pdb_header
Bio.ParserSupport._fails_conditions
Bio.ParserSupport.attempt_read_and_call
Bio.ParserSupport.is_blank_line
Bio.ParserSupport.read_and_call
Bio.ParserSupport.read_and_call_until
Bio.ParserSupport.read_and_call_while
Bio.ParserSupport.safe_peekline
Bio.ParserSupport.safe_readline
Bio.Pathway.Rep.MultiGraph.bf_search
Bio.Pathway.Rep.MultiGraph.df_search
Bio.Phylo.Applications._Fasttree._is_int
Bio.Phylo.Applications._Fasttree._is_numeric
Bio.Phylo.BaseTree._attribute_matcher
Bio.Phylo.BaseTree._class_matcher
Bio.Phylo.BaseTree._combine_args
Bio.Phylo.BaseTree._combine_matchers
Bio.Phylo.BaseTree._function_matcher
Bio.Phylo.BaseTree._identity_matcher
Bio.Phylo.BaseTree._level_traverse
Bio.Phylo.BaseTree._object_matcher
Bio.Phylo.BaseTree._postorder_traverse
Bio.Phylo.BaseTree._preorder_traverse
Bio.Phylo.BaseTree._sorted_attrs
Bio.Phylo.BaseTree._string_matcher
Bio.Phylo.CDAOIO.format_label
Bio.Phylo.CDAOIO.parse
Bio.Phylo.CDAOIO.qUri
Bio.Phylo.CDAOIO.write
Bio.Phylo.Consensus._bitstring_topology
Bio.Phylo.Consensus._clade_to_bitstr
Bio.Phylo.Consensus._count_clades
Bio.Phylo.Consensus._equal_topology
Bio.Phylo.Consensus._part
Bio.Phylo.Consensus._sub_clade
Bio.Phylo.Consensus._tree_to_bitstrs
Bio.Phylo.Consensus.adam_consensus
Bio.Phylo.Consensus.bootstrap
Bio.Phylo.Consensus.bootstrap_consensus
Bio.Phylo.Consensus.bootstrap_trees
Bio.Phylo.Consensus.get_support
Bio.Phylo.Consensus.majority_consensus
Bio.Phylo.Consensus.strict_consensus
Bio.Phylo.NeXMLIO.cdao_to_obo
Bio.Phylo.NeXMLIO.matches
Bio.Phylo.NeXMLIO.parse
Bio.Phylo.NeXMLIO.qUri
Bio.Phylo.NeXMLIO.write
Bio.Phylo.NewickIO._format_comment
Bio.Phylo.NewickIO._get_comment
Bio.Phylo.NewickIO._parse_confidence
Bio.Phylo.NewickIO.parse
Bio.Phylo.NewickIO.write
Bio.Phylo.NexusIO.parse
Bio.Phylo.NexusIO.write
Bio.Phylo.PAML._parse_baseml.parse_basics
Bio.Phylo.PAML._parse_baseml.parse_freqs
Bio.Phylo.PAML._parse_baseml.parse_kappas
Bio.Phylo.PAML._parse_baseml.parse_parameter_list
Bio.Phylo.PAML._parse_baseml.parse_parameters
Bio.Phylo.PAML._parse_baseml.parse_rates
Bio.Phylo.PAML._parse_codeml.parse_basics
Bio.Phylo.PAML._parse_codeml.parse_branch_site_a
Bio.Phylo.PAML._parse_codeml.parse_clademodelc
Bio.Phylo.PAML._parse_codeml.parse_distances
Bio.Phylo.PAML._parse_codeml.parse_model
Bio.Phylo.PAML._parse_codeml.parse_nssites
Bio.Phylo.PAML._parse_codeml.parse_pairwise
Bio.Phylo.PAML._parse_codeml.parse_siteclass_omegas
Bio.Phylo.PAML._parse_codeml.parse_siteclass_proportions
Bio.Phylo.PAML._parse_yn00.parse_ng86
Bio.Phylo.PAML._parse_yn00.parse_others
Bio.Phylo.PAML._parse_yn00.parse_yn00
Bio.Phylo.PAML.baseml.read
Bio.Phylo.PAML.chi2._incomplete_gamma
Bio.Phylo.PAML.chi2._ln_gamma_function
Bio.Phylo.PAML.chi2.cdf_chi2
Bio.Phylo.PAML.codeml.read
Bio.Phylo.PAML.yn00.read
Bio.Phylo.PhyloXML._check_str
Bio.Phylo.PhyloXMLIO._clean_attrib
Bio.Phylo.PhyloXMLIO._collapse_wspace
Bio.Phylo.PhyloXMLIO._dict_str2bool
Bio.Phylo.PhyloXMLIO._float
Bio.Phylo.PhyloXMLIO._get_child_as
Bio.Phylo.PhyloXMLIO._get_child_text
Bio.Phylo.PhyloXMLIO._get_children_as
Bio.Phylo.PhyloXMLIO._get_children_text
Bio.Phylo.PhyloXMLIO._handle_complex
Bio.Phylo.PhyloXMLIO._handle_simple
Bio.Phylo.PhyloXMLIO._indent
Bio.Phylo.PhyloXMLIO._int
Bio.Phylo.PhyloXMLIO._local
Bio.Phylo.PhyloXMLIO._ns
Bio.Phylo.PhyloXMLIO._replace_wspace
Bio.Phylo.PhyloXMLIO._serialize
Bio.Phylo.PhyloXMLIO._split_namespace
Bio.Phylo.PhyloXMLIO._str2bool
Bio.Phylo.PhyloXMLIO.parse
Bio.Phylo.PhyloXMLIO.read
Bio.Phylo.PhyloXMLIO.write
Bio.Phylo.TreeConstruction._is_numeric
Bio.Phylo._cdao_owl.resolve_uri
Bio.Phylo._io.convert
Bio.Phylo._io.parse
Bio.Phylo._io.read
Bio.Phylo._io.write
Bio.Phylo._utils.draw
Bio.Phylo._utils.draw_ascii
Bio.Phylo._utils.draw_graphviz
Bio.Phylo._utils.to_networkx
Bio.PopGen.FDist.Controller.my_float
Bio.PopGen.FDist.Utils._convert_genepop_to_fdist
Bio.PopGen.FDist.Utils._convert_genepop_to_fdist_big
Bio.PopGen.FDist.Utils._convert_genepop_to_fdist_big_old
Bio.PopGen.FDist.Utils.approximate_fst
Bio.PopGen.FDist.Utils.convert_genepop_to_fdist
Bio.PopGen.GenePop.Controller._gp_float
Bio.PopGen.GenePop.Controller._gp_int
Bio.PopGen.GenePop.Controller._hw_func
Bio.PopGen.GenePop.Controller._read_allele_freq_table
Bio.PopGen.GenePop.Controller._read_headed_triangle_matrix
Bio.PopGen.GenePop.Controller._read_table
Bio.PopGen.GenePop.Controller._read_triangle_matrix
Bio.PopGen.GenePop.FileParser.read
Bio.PopGen.GenePop.LargeFileParser.get_indiv
Bio.PopGen.GenePop.LargeFileParser.read
Bio.PopGen.GenePop.get_indiv
Bio.PopGen.GenePop.read
Bio.PopGen.SimCoal.Template._gen_loci
Bio.PopGen.SimCoal.Template.dupe
Bio.PopGen.SimCoal.Template.exec_template
Bio.PopGen.SimCoal.Template.generate_island_mat
Bio.PopGen.SimCoal.Template.generate_join_events
Bio.PopGen.SimCoal.Template.generate_model
Bio.PopGen.SimCoal.Template.generate_null_mat
Bio.PopGen.SimCoal.Template.generate_simcoal_from_template
Bio.PopGen.SimCoal.Template.generate_ssm2d_mat
Bio.PopGen.SimCoal.Template.get_chr_template
Bio.PopGen.SimCoal.Template.get_demography_template
Bio.PopGen.SimCoal.Template.get_step_2d
Bio.PopGen.SimCoal.Template.get_xy_from_matrix
Bio.PopGen.SimCoal.Template.no_processor
Bio.PopGen.SimCoal.Template.process_para
Bio.PopGen.SimCoal.Template.process_text
Bio.Restriction.Restriction._check_bases
Bio.SCOP.Cla.parse
Bio.SCOP.Des.parse
Bio.SCOP.Dom.parse
Bio.SCOP.Hie.parse
Bio.SCOP.Raf.normalize_letters
Bio.SCOP.Raf.parse
Bio.SCOP._open
Bio.SCOP._open_scop_file
Bio.SCOP.cmp_sccs
Bio.SCOP.parse_domain
Bio.SCOP.search
Bio.SearchIO.BlastIO.blast_tab._augment_blast_hsp
Bio.SearchIO.BlastIO.blast_tab._compute_gapopen_num
Bio.SearchIO.BlastIO.blast_tab._list_diamond
Bio.SearchIO.BlastIO.blast_tab._list_semicol
Bio.SearchIO.BlatIO._calc_millibad
Bio.SearchIO.BlatIO._calc_score
Bio.SearchIO.BlatIO._create_hsp
Bio.SearchIO.BlatIO._is_protein
Bio.SearchIO.BlatIO._list_from_csv
Bio.SearchIO.BlatIO._reorient_starts
Bio.SearchIO.ExonerateIO._base._adjust_aa_seq
Bio.SearchIO.ExonerateIO._base._create_hsp
Bio.SearchIO.ExonerateIO._base._make_triplets
Bio.SearchIO.ExonerateIO._base._parse_hit_or_query_line
Bio.SearchIO.ExonerateIO._base._set_frame
Bio.SearchIO.ExonerateIO._base._split_fragment
Bio.SearchIO.ExonerateIO.exonerate_text._clean_blocks
Bio.SearchIO.ExonerateIO.exonerate_text._comp_coords
Bio.SearchIO.ExonerateIO.exonerate_text._comp_intron_lens
Bio.SearchIO.ExonerateIO.exonerate_text._comp_split_codons
Bio.SearchIO.ExonerateIO.exonerate_text._flip_codons
Bio.SearchIO.ExonerateIO.exonerate_text._get_block_coords
Bio.SearchIO.ExonerateIO.exonerate_text._get_blocks
Bio.SearchIO.ExonerateIO.exonerate_text._get_inter_coords
Bio.SearchIO.ExonerateIO.exonerate_text._get_row_dict
Bio.SearchIO.ExonerateIO.exonerate_text._get_scodon_moves
Bio.SearchIO.ExonerateIO.exonerate_text._stitch_rows
Bio.SearchIO.ExonerateIO.exonerate_vulgar.parse_vulgar_comp
Bio.SearchIO.FastaIO._get_aln_slice_coords
Bio.SearchIO.FastaIO._set_hsp_seqs
Bio.SearchIO.FastaIO._set_qresult_hits
Bio.SearchIO._utils.allitems
Bio.SearchIO._utils.fragcascade
Bio.SearchIO._utils.fullcascade
Bio.SearchIO._utils.get_processor
Bio.SearchIO._utils.optionalcascade
Bio.SearchIO._utils.singleitem
Bio.SearchIO.convert
Bio.SearchIO.index
Bio.SearchIO.index_db
Bio.SearchIO.parse
Bio.SearchIO.read
Bio.SearchIO.to_dict
Bio.SearchIO.write
Bio.Seq._maketrans
Bio.Seq._test
Bio.Seq._translate_str
Bio.Seq.back_transcribe
Bio.Seq.reverse_complement
Bio.Seq.transcribe
Bio.Seq.translate
Bio.SeqIO.AbiIO.AbiIterator
Bio.SeqIO.AbiIO._AbiTrimIterator
Bio.SeqIO.AbiIO._abi_parse_header
Bio.SeqIO.AbiIO._abi_trim
Bio.SeqIO.AbiIO._parse_tag_data
Bio.SeqIO.AceIO.AceIterator
Bio.SeqIO.FastaIO.FastaIterator
Bio.SeqIO.FastaIO.SimpleFastaParser
Bio.SeqIO.IgIO.IgIterator
Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator
Bio.SeqIO.InsdcIO.EmblIterator
Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator
Bio.SeqIO.InsdcIO.GenBankIterator
Bio.SeqIO.InsdcIO.ImgtIterator
Bio.SeqIO.InsdcIO._insdc_feature_location_string
Bio.SeqIO.InsdcIO._insdc_feature_position_string
Bio.SeqIO.InsdcIO._insdc_location_string
Bio.SeqIO.InsdcIO._insdc_location_string_ignoring_strand_and_subfeatures
Bio.SeqIO.PdbIO.PdbAtomIterator
Bio.SeqIO.PdbIO.PdbSeqresIterator
Bio.SeqIO.PhdIO.PhdIterator
Bio.SeqIO.PirIO.PirIterator
Bio.SeqIO.QualityIO.FastqGeneralIterator
Bio.SeqIO.QualityIO.FastqIlluminaIterator
Bio.SeqIO.QualityIO.FastqPhredIterator
Bio.SeqIO.QualityIO.FastqSolexaIterator
Bio.SeqIO.QualityIO.PairedFastaQualIterator
Bio.SeqIO.QualityIO.QualPhredIterator
Bio.SeqIO.QualityIO._get_illumina_quality_str
Bio.SeqIO.QualityIO._get_phred_quality
Bio.SeqIO.QualityIO._get_sanger_quality_str
Bio.SeqIO.QualityIO._get_solexa_quality_str
Bio.SeqIO.QualityIO.phred_quality_from_solexa
Bio.SeqIO.QualityIO.solexa_quality_from_phred
Bio.SeqIO.SffIO.ReadRocheXmlManifest
Bio.SeqIO.SffIO.SffIterator
Bio.SeqIO.SffIO._SffTrimIterator
Bio.SeqIO.SffIO._check_eof
Bio.SeqIO.SffIO._get_read_region
Bio.SeqIO.SffIO._get_read_time
Bio.SeqIO.SffIO._get_read_xy
Bio.SeqIO.SffIO._sff_do_slow_index
Bio.SeqIO.SffIO._sff_file_header
Bio.SeqIO.SffIO._sff_find_roche_index
Bio.SeqIO.SffIO._sff_read_raw_record
Bio.SeqIO.SffIO._sff_read_roche_index
Bio.SeqIO.SffIO._sff_read_seq_record
Bio.SeqIO.SffIO._string_as_base_36
Bio.SeqIO.SwissIO.SwissIterator
Bio.SeqIO.SwissIO._make_position
Bio.SeqIO.SwissIO._make_seqfeature
Bio.SeqIO.TabIO.TabIterator
Bio.SeqIO.UniprotIO.UniprotIterator
Bio.SeqIO._convert._embl_convert_fasta
Bio.SeqIO._convert._fastq_convert_fasta
Bio.SeqIO._convert._fastq_convert_qual
Bio.SeqIO._convert._fastq_convert_tab
Bio.SeqIO._convert._fastq_generic
Bio.SeqIO._convert._fastq_generic2
Bio.SeqIO._convert._fastq_illumina_convert_fastq_illumina
Bio.SeqIO._convert._fastq_illumina_convert_fastq_sanger
Bio.SeqIO._convert._fastq_illumina_convert_fastq_solexa
Bio.SeqIO._convert._fastq_illumina_convert_qual
Bio.SeqIO._convert._fastq_sanger_convert_fastq_illumina
Bio.SeqIO._convert._fastq_sanger_convert_fastq_sanger
Bio.SeqIO._convert._fastq_sanger_convert_fastq_solexa
Bio.SeqIO._convert._fastq_sanger_convert_qual
Bio.SeqIO._convert._fastq_solexa_convert_fastq_illumina
Bio.SeqIO._convert._fastq_solexa_convert_fastq_sanger
Bio.SeqIO._convert._fastq_solexa_convert_fastq_solexa
Bio.SeqIO._convert._fastq_solexa_convert_qual
Bio.SeqIO._convert._genbank_convert_fasta
Bio.SeqIO._convert._handle_convert
Bio.SeqIO._force_alphabet
Bio.SeqIO.convert
Bio.SeqIO.index
Bio.SeqIO.index_db
Bio.SeqIO.parse
Bio.SeqIO.read
Bio.SeqIO.to_dict
Bio.SeqIO.write
Bio.SeqUtils.CheckSum._init_table_h
Bio.SeqUtils.CheckSum.crc32
Bio.SeqUtils.CheckSum.crc64
Bio.SeqUtils.CheckSum.gcg
Bio.SeqUtils.CheckSum.seguid
Bio.SeqUtils.GC
Bio.SeqUtils.GC123
Bio.SeqUtils.GC_skew
Bio.SeqUtils.MeltingTemp.Tm_staluc
Bio.SeqUtils.MeltingTemp._test
Bio.SeqUtils._test
Bio.SeqUtils.lcc.lcc_mult
Bio.SeqUtils.lcc.lcc_simp
Bio.SeqUtils.molecular_weight
Bio.SeqUtils.nt_search
Bio.SeqUtils.quick_FASTA_reader
Bio.SeqUtils.seq1
Bio.SeqUtils.seq3
Bio.SeqUtils.six_frame_translations
Bio.SeqUtils.xGC_skew
Bio.Sequencing.Ace.parse
Bio.Sequencing.Ace.read
Bio.Sequencing.Applications._Novoalign._test
Bio.Sequencing.Applications._bwa._test
Bio.Sequencing.Applications._samtools._test
Bio.Sequencing.Phd.parse
Bio.Sequencing.Phd.read
Bio.Statistics.lowess._test
Bio.Statistics.lowess.lowess
Bio.SubsMat.FreqTable.read_count
Bio.SubsMat.FreqTable.read_freq
Bio.SubsMat._build_exp_freq_mat
Bio.SubsMat._build_log_odds_mat
Bio.SubsMat._build_obs_freq_mat
Bio.SubsMat._build_subs_mat
Bio.SubsMat._exp_freq_table_from_obs_freq
Bio.SubsMat.make_log_odds_matrix
Bio.SubsMat.observed_frequency_to_substitution_matrix
Bio.SubsMat.read_text_matrix
Bio.SubsMat.two_mat_DJS
Bio.SubsMat.two_mat_correlation
Bio.SubsMat.two_mat_relative_entropy
Bio.SwissProt.KeyWList.parse
Bio.SwissProt._read
Bio.SwissProt._read_cc
Bio.SwissProt._read_dr
Bio.SwissProt._read_dt
Bio.SwissProt._read_ft
Bio.SwissProt._read_id
Bio.SwissProt._read_oh
Bio.SwissProt._read_ox
Bio.SwissProt._read_rc
Bio.SwissProt._read_rn
Bio.SwissProt._read_rx
Bio.SwissProt.parse
Bio.SwissProt.read
Bio.TogoWS._get_convert_formats
Bio.TogoWS._get_entry_dbs
Bio.TogoWS._get_entry_fields
Bio.TogoWS._get_entry_formats
Bio.TogoWS._get_fields
Bio.TogoWS._open
Bio.TogoWS.convert
Bio.TogoWS.entry
Bio.TogoWS.search
Bio.TogoWS.search_count
Bio.TogoWS.search_iter
Bio.UniGene._read
Bio.UniGene.parse
Bio.UniGene.read
Bio.UniProt.GOA._gaf10byproteiniterator
Bio.UniProt.GOA._gaf10iterator
Bio.UniProt.GOA._gaf20byproteiniterator
Bio.UniProt.GOA._gaf20iterator
Bio.UniProt.GOA._gpa10iterator
Bio.UniProt.GOA._gpa11iterator
Bio.UniProt.GOA._gpi10iterator
Bio.UniProt.GOA._gpi11iterator
Bio.UniProt.GOA.gafbyproteiniterator
Bio.UniProt.GOA.gafiterator
Bio.UniProt.GOA.gpa_iterator
Bio.UniProt.GOA.gpi_iterator
Bio.UniProt.GOA.record_has
Bio.UniProt.GOA.writebyproteinrec
Bio.UniProt.GOA.writerec
Bio.Wise._build_align_cmdline
Bio.Wise._test
Bio.Wise.align
Bio.Wise.all_pairs
Bio.Wise.dnal._alb_line2coords
Bio.Wise.dnal._build_dnal_cmdline
Bio.Wise.dnal._fgrep_count
Bio.Wise.dnal._get_coords
Bio.Wise.dnal._test
Bio.Wise.dnal.align
Bio.Wise.dnal.main
Bio.Wise.main
Bio.Wise.psw._test
Bio.Wise.psw.align
Bio.Wise.psw.main
Bio.Wise.psw.parse
Bio.Wise.psw.parse_line
Bio._py3k._as_bytes
Bio._py3k._as_unicode
Bio._py3k._binary_to_string_handle
Bio._py3k._bytes_to_string
Bio._py3k._is_int_or_long
Bio._py3k._string_to_bytes
Bio._utils.find_test_dir
Bio._utils.getattr_str
Bio._utils.iterlen
Bio._utils.read_forward
Bio._utils.run_doctest
Bio._utils.trim_str
Bio.bgzf.BgzfBlocks
Bio.bgzf._load_bgzf_block
Bio.bgzf.make_virtual_offset
Bio.bgzf.open
Bio.bgzf.split_virtual_offset
Bio.cpairwise2._make_score_matrix_fast
Bio.cpairwise2.rint
Bio.kNN.calculate
Bio.kNN.classify
Bio.kNN.equal_weight
Bio.kNN.train
Bio.motifs._pwm.calculate
Bio.motifs.alignace.read
Bio.motifs.applications._alignace._test
Bio.motifs.applications._xxmotif._test
Bio.motifs.create
Bio.motifs.jaspar._read_jaspar
Bio.motifs.jaspar._read_pfm
Bio.motifs.jaspar._read_sites
Bio.motifs.jaspar.calculate_pseudocounts
Bio.motifs.jaspar.read
Bio.motifs.jaspar.split_jaspar_id
Bio.motifs.jaspar.write
Bio.motifs.mast.__read_database_and_motifs
Bio.motifs.mast.__read_section_i
Bio.motifs.mast.__read_section_ii
Bio.motifs.mast.__read_section_iii
Bio.motifs.mast.__read_version
Bio.motifs.mast.read
Bio.motifs.meme.__read_alphabet
Bio.motifs.meme.__read_command
Bio.motifs.meme.__read_datafile
Bio.motifs.meme.__read_motif_name
Bio.motifs.meme.__read_motif_sequences
Bio.motifs.meme.__read_motif_statistics
Bio.motifs.meme.__read_sequences
Bio.motifs.meme.__read_version
Bio.motifs.meme.__skip_unused_lines
Bio.motifs.meme.read
Bio.motifs.parse
Bio.motifs.read
Bio.motifs.transfac.read
Bio.motifs.transfac.write
Bio.motifs.write
Bio.pairwise2._align
Bio.pairwise2._clean_alignments
Bio.pairwise2._find_global_start
Bio.pairwise2._find_local_start
Bio.pairwise2._find_start
Bio.pairwise2._lpad
Bio.pairwise2._lpad_until_equal
Bio.pairwise2._make_score_matrix_generic
Bio.pairwise2._pad
Bio.pairwise2._pad_until_equal
Bio.pairwise2._recover_alignments
Bio.pairwise2._test
Bio.pairwise2.calc_affine_penalty
Bio.pairwise2.format_alignment
Bio.pairwise2.print_matrix
Bio.trie.load
Bio.trie.save
Bio.trie.trie
Bio.triefind.find
Bio.triefind.find_words
Bio.triefind.match
Bio.triefind.match_all
BioSQL.BioSeq._make_unicode_into_string
BioSQL.BioSeq._retrieve_annotations
BioSQL.BioSeq._retrieve_comment
BioSQL.BioSeq._retrieve_dbxrefs
BioSQL.BioSeq._retrieve_features
BioSQL.BioSeq._retrieve_location_qualifier_value
BioSQL.BioSeq._retrieve_qualifier_value
BioSQL.BioSeq._retrieve_reference
BioSQL.BioSeq._retrieve_seq
BioSQL.BioSeq._retrieve_taxon
BioSQL.BioSeqDatabase.open_database
BioSQL.DBUtils.get_dbutils

All Variables

Bio.Affy.CelFile.__package__
Bio.Affy.__package__
Bio.Align.AlignInfo.Nucleotide4Random
Bio.Align.AlignInfo.Protein20Random
Bio.Align.AlignInfo.__package__
Bio.Align.Applications._ClustalOmega.__package__
Bio.Align.Applications._Clustalw.__package__
Bio.Align.Applications._Dialign.__package__
Bio.Align.Applications._MSAProbs.__package__
Bio.Align.Applications._Mafft.__package__
Bio.Align.Applications._Muscle.__package__
Bio.Align.Applications._Prank.__package__
Bio.Align.Applications._Probcons.__package__
Bio.Align.Applications._TCoffee.__package__
Bio.Align.Applications.__package__
Bio.Align.Generic.__package__
Bio.Align.__package__
Bio.AlignIO.ClustalIO.__package__
Bio.AlignIO.EmbossIO.__package__
Bio.AlignIO.FastaIO.__package__
Bio.AlignIO.Interfaces.__package__
Bio.AlignIO.NexusIO.__package__
Bio.AlignIO.PhylipIO._PHYLIP_ID_WIDTH
Bio.AlignIO.PhylipIO.__package__
Bio.AlignIO.StockholmIO.__package__
Bio.AlignIO._FormatToIterator
Bio.AlignIO._FormatToWriter
Bio.AlignIO.__package__
Bio.Alphabet.IUPAC.__package__
Bio.Alphabet.IUPAC.ambiguous_dna
Bio.Alphabet.IUPAC.ambiguous_rna
Bio.Alphabet.IUPAC.extended_dna
Bio.Alphabet.IUPAC.extended_protein
Bio.Alphabet.IUPAC.protein
Bio.Alphabet.IUPAC.unambiguous_dna
Bio.Alphabet.IUPAC.unambiguous_rna
Bio.Alphabet.Reduced.__package__
Bio.Alphabet.Reduced.hp_model
Bio.Alphabet.Reduced.hp_model_tab
Bio.Alphabet.Reduced.murphy_10
Bio.Alphabet.Reduced.murphy_10_tab
Bio.Alphabet.Reduced.murphy_15
Bio.Alphabet.Reduced.murphy_15_tab
Bio.Alphabet.Reduced.murphy_4
Bio.Alphabet.Reduced.murphy_4_tab
Bio.Alphabet.Reduced.murphy_8
Bio.Alphabet.Reduced.murphy_8_tab
Bio.Alphabet.Reduced.pc_5_table
Bio.Alphabet.__package__
Bio.Alphabet.generic_alphabet
Bio.Alphabet.generic_dna
Bio.Alphabet.generic_nucleotide
Bio.Alphabet.generic_protein
Bio.Alphabet.generic_rna
Bio.Alphabet.single_letter_alphabet
Bio.Application.__package__
Bio.Application._local_reserved_names
Bio.Application._re_prop_name
Bio.Application._reserved_names
Bio.Blast.Applications.__package__
Bio.Blast.NCBIStandalone.__package__
Bio.Blast.NCBIStandalone.__warningregistry__
Bio.Blast.NCBIWWW.__package__
Bio.Blast.NCBIXML.__package__
Bio.Blast.ParseBlastTable.__package__
Bio.Blast.ParseBlastTable.reader_keywords
Bio.Blast.Record.__package__
Bio.Blast.__package__
Bio.CAPS.__package__
Bio.Cluster.__package__
Bio.Cluster.cluster.__package__
Bio.CodonAlign.CodonAlignment'.__package__
Bio.CodonAlign.CodonAlignment'.default_codon_alphabet
Bio.CodonAlign.CodonAlignment'.default_codon_table
Bio.CodonAlign.CodonAlphabet'.__package__
Bio.CodonAlign.CodonAlphabet'.default_alphabet
Bio.CodonAlign.CodonAlphabet'.default_codon_alphabet
Bio.CodonAlign.CodonAlphabet'.default_codon_table
Bio.CodonAlign.CodonAlphabet'.generic_by_id
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