August 2009 Archives by thread

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Starting: Sat Aug 1 16:46:38 EDT 2009
Ending: Mon Aug 31 13:44:44 EDT 2009
Messages: 171

• [Biopython-dev] [Bug 2894] New: Jython List difference causes failed assertion in CondonTable Fix+Patch   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2894] Jython List difference causes failed assertion in CondonTable Fix+Patch   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2894] Jython List difference causes failed assertion in CondonTable Fix+Patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2895] New: Bio.Restriction.Restriction_Dictionary Jython Error Fix+Patch   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2895] Bio.Restriction.Restriction_Dictionary Jython Error Fix+Patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSoC Weekly Update 11: PhyloXML for Biopython   Eric Talevich
  • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 11: PhyloXML for Biopython   Brad Chapman
    • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 11: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 11: PhyloXML for Biopython   Peter
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 11: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 11: PhyloXML for Biopython   Brad Chapman
• [Biopython-dev] RFC: RNAStructure package for BioPython   Kristian Rother
  • [Biopython-dev] RFC: RNAStructure package for BioPython   Brad Chapman
  • [Biopython-dev] RFC: RNAStructure package for BioPython   Peter
    • [Biopython-dev] RFC: RNAStructure package for BioPython   Hilmar Lapp
      • [Biopython-dev] RFC: RNAStructure package for BioPython   Peter
• [Biopython-dev] [Bug 2896] New: BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Deprecating Bio.Fasta?   Peter
  • [Biopython-dev] Deprecating Bio.Fasta?   Peter
• [Biopython-dev] 1.52   Tiago Antão
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
  • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Brad Chapman
    • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Peter
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Brad Chapman
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Peter
      • [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
  • [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
    • [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
      • [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
      • [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] RFC: RNAStructure package for BioPython   Kristian Rother
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
  • [Biopython-dev] Bio.SeqIO.convert function?   Peter
    • [Biopython-dev] Bio.SeqIO.convert function?   Peter
    • [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Unit tests for deprecated modules?   Peter
  • [Biopython-dev] Unit tests for deprecated modules?   Peter
• [Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSoC Weekly Update 12: PhyloXML for Biopython   Eric Talevich
  • [Biopython-dev] GSoC Weekly Update 12: PhyloXML for Biopython   Brad Chapman
    • [Biopython-dev] GSoC Weekly Update 12: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] Drafting announcement for Biopython 1.51?   Peter
  • [Biopython-dev] Drafting announcement for Biopython 1.51?   David Winter
    • [Biopython-dev] Drafting announcement for Biopython 1.51?   Peter
      • [Biopython-dev] Draft announcement for Biopython 1.51   David Winter
      • [Biopython-dev] Draft announcement for Biopython 1.51   Peter
      • [Biopython-dev] Drafting announcement for Biopython 1.51?   David Winter
      • [Biopython-dev] Drafting announcement for Biopython 1.51?   Peter
• [Biopython-dev] sff reader   Peter
  • [Biopython-dev] sff reader   Peter
• [Biopython-dev] [Biopython] Trimming adaptors sequences   Peter
• [Biopython-dev] sff reader   Peter
  • [Biopython-dev] sff reader   Peter
  • [Biopython-dev] sff reader   Peter
• [Biopython-dev] sff reader   Blanca Postigo Jose Miguel
  • [Biopython-dev] sff reader   Peter
• [Biopython-dev] sff reader   Peter
• [Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython 1.51 code freeze   Brad Chapman
  • [Biopython-dev] Biopython 1.51 code freeze   Peter
  • [Biopython-dev] Biopython 1.51 code freeze   Tiago Antão
• [Biopython-dev] Biopython 1.51 status   Brad Chapman
  • [Biopython-dev] Biopython 1.51 status   Peter
    • [Biopython-dev] Biopython 1.51 status   Peter
      • [Biopython-dev] Biopython 1.51 status   Brad Chapman
      • [Biopython-dev] Biopython 1.51 status   Peter
      • [Biopython-dev] Biopython 1.51 status   Eric Talevich
      • [Biopython-dev] Biopython 1.51 status   Brad Chapman
      • [Biopython-dev] Biopython 1.51 status   Bartek Wilczynski
• [Biopython-dev] Moving from CVS to git   Peter
  • [Biopython-dev] Moving from CVS to git   Bartek Wilczynski
    • [Biopython-dev] Moving from CVS to git   Peter
      • [Biopython-dev] Moving from CVS to git   Hilmar Lapp
      • [Biopython-dev] Moving from CVS to git   Peter
      • [Biopython-dev] Moving from CVS to git   Bartek Wilczynski
      • [Biopython-dev] Moving from CVS to git   Peter
      • [Biopython-dev] Moving from CVS to git   Hilmar Lapp
  • [Biopython-dev] Moving from CVS to git   Frank Kauff
• [Biopython-dev] biopython-1.51 test log, sage inclusion   Marshall Hampton
  • [Biopython-dev] biopython-1.51 test log, sage inclusion   Peter
    • [Biopython-dev] biopython-1.51 test log, sage inclusion   Peter
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Marshall Hampton
    • [Biopython-dev] biopython-1.51 test log, sage inclusion   Marshall Hampton
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Marshall Hampton
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Peter
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Peter
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Marshall Hampton
      • [Biopython-dev] biopython-1.51 test log, sage inclusion   Peter
• [Biopython-dev] old Martel release   Andrew Dalke
  • [Biopython-dev] old Martel release   Andrew Dalke
    • [Biopython-dev] old Martel release   Peter
• [Biopython-dev] GSoC final update: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] [Bug 2619] Bio.PDB.MMCIFParser component MMCIFlex commented out in setup.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2619] Bio.PDB.MMCIFParser component MMCIFlex commented out in setup.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Deprecating Bio.AlignAce and Bio.MEME?   Peter
  • [Biopython-dev] Deprecating Bio.AlignAce and Bio.MEME?   Bartek Wilczynski
    • [Biopython-dev] Deprecating Bio.AlignAce and Bio.MEME?   Peter
• [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
  • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Michiel de Hoon
    • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
      • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
      • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
  • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
    • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Brad Chapman
      • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
      • [Biopython-dev] Indexing (large) sequence files with Bio.SeqIO   Peter
• [Biopython-dev] Deprecating Bio.AlignAce and Bio.MEME?   Peter
• [Biopython-dev] Moving from CVS to git   Peter
  • [Biopython-dev] Moving from CVS to git   Bartek Wilczynski
    • [Biopython-dev] Moving from CVS to git   Peter
    • [Biopython-dev] Moving from CVS to git   Peter
      • [Biopython-dev] Moving from CVS to git   Bartek Wilczynski
      • [Biopython-dev] Moving from CVS to git   Bartek Wilczynski
      • [Biopython-dev] Moving from CVS to git   Peter
      • [Biopython-dev] Moving from CVS to git   Peter
• [Biopython-dev] [Root-l] Moving from CVS to git   Peter
  • [Biopython-dev] [Root-l] Moving from CVS to git   Chris Dagdigian
    • [Biopython-dev] [Root-l] Moving from CVS to git   Bartek Wilczynski
• [Biopython-dev] [Root-l] Moving from CVS to git   Peter
• [Biopython-dev] [Root-l] Moving from CVS to git   Chris Dagdigian
• [Biopython-dev] [Bug 2867] Bio.PDB.PDBList.update_pdb calls invalid os.cmd   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2544] Bio.GenBank and SeqFeature improvements   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2711] GenomeDiagram.py: write() and write_to_string() are inefficient and don't check inputs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq + SeqRecord objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] how to determine BioPython version number   Mike Williams
  • [Biopython-dev] how to determine BioPython version number   Peter
    • [Biopython-dev] how to determine BioPython version number   Mike Williams
• [Biopython-dev] [Bug 2904] New: Interface for Novoalign   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2904] Interface for Novoalign   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2905] New: Short read alignment format   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2907] New: When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Command line wrappers for assembly tools   Peter
  • [Biopython-dev] Command line wrappers for assembly tools   Brad Chapman
    • [Biopython-dev] Command line wrappers for assembly tools   Peter
• [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Michiel de Hoon
  • [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Bartek Wilczynski
    • [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Peter
• [Biopython-dev] Fwd: More FASTQ examples for cross project testing   Peter
• [Biopython-dev] [Biopython] Filtering SeqRecord feature list / nested SeqFeatures   Peter
  • [Biopython-dev] [Biopython] Filtering SeqRecord feature list / nested SeqFeatures   Brad Chapman
    • [Biopython-dev] [Biopython] Filtering SeqRecord feature list / nested SeqFeatures   Peter
• [Biopython-dev] OBO2OWL parser / converter   Ed Cannon
  • [Biopython-dev] OBO2OWL parser / converter   Hilmar Lapp
• [Biopython-dev] RNA module contributions   Kristian Rother
• [Biopython-dev] Fw: Re: RNA module contributions   Michiel de Hoon

Last message date: Mon Aug 31 13:44:44 EDT 2009
Archived on: Mon Aug 31 13:44:48 EDT 2009

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